RNA id: TU118847


Basic Information

Item Value
RNA id TU118847
length 1959
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G95298
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 1743542 ~ 1772882 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagtgcatcgcaatttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccaaaagtgcctagaatgggcatgtgagcaacagaactggaccacggagcaatggaagaaggtggtctggtctgatggAATCaggagttcaaggtgttgacttggcctccaaattccccagatctcaatccaatcgagcatatgtgggatgtgctggccaatcaagtctgatccatggaggccccacctcgcaacttacaggacttaaaggatctgctgctaacatcttggtgccagataccacagcacacattcagaggtctagtggagaccttgcctcgacgggtcagggctgtttttgtggcaaaagggggacctacacaatattaggcaggtggtcgtAATTTTATGGCtaatcggtgtgtatatatgtgtcaTGTGCATTGATGTACAATttcaaccttatctgaaaaTTATCTGTGTAAATGGGAAACTATGTAAACTAATGCAATATAGGCAGTCAATCCtatttgtgctgttttcagtaTCCCAGGCCTGTCATTGcatagaaagcagctgtcattccatgtcattccacttaatttttttatctggtgttattttaaagaaagtgtattcaggattttcggattcctgtgtgggatttggagatagaggcagtccttctgttttccctattgtagtctatgggcattccactccccattatagtcaatgggtattctgttttgtcatttgttttagtctgtcagaaataaattaatagtaaAGTTATATCAACACTTATCTGTGTTCTAGGTAAGGTCGTGttgtgattgtatttgtatttatttatttaaatatcagctacagccatttagaaataataacacaaacttttaaatcaataaaaccgTTTATTGTTACATATCTCTGCACATCttcgagctctcaattacttaattgaacccttaattgaactaatactttcctaaatcagagcattttcactattttaaacaACCCTTTTATTacccattttaaaaagtcatatctaagcagatttttacttcaattaaggttcaattaaataattgagagctcgttgggaacaaaaaccagcagggtatggggtcctccaggacaaGGGTTGCTCTAAGGGGACaaatggacccaaaccatgccaggaaaatgccccccacagcataacagaacctccggaccccctcactgtaggggtcaagcagtcaggcctgtactatTCTCTGGTTGttccacacatgcactcgcccacttgtccagaacatgagccagttgagcgtctgtggctgaagctcctgccattcatgccccaataatgacccctctttcaaagtcacttagatcctttcctcttgccatcttgatccacaatcgaggtcaactgggactgttcagcatttgtatacatgccacagagcatgataggattttaattgcttgtatcatgcagtacacctgtttggaggcatctgcatttgttatgttcctccactcatttattcaggcttCCCCTTTaaaccagtacttttacttctacttgagtaaaatttcatcaaagtaacagtacttgagtaggatttttcagtactctttcctcctctgaacaaaatatactgtaataagTGAAACTGAATATACAGAATATCGATTGCAGCAAACAGAATAGGGAATTACTAATATTGGGCACTTGCTACATGAGCCCTAATTGTATGTCATGGCAGAAAATGAagtgtttgtaatgtttgtagATCAAATGGTACAGTTAATCTTagccttgagcaaggtacttacTTCACTTACATTCTCCAgcaaaatacccagctgtataaatgggtacaaatgtaagtctccctggatatgggtgtctgctaagtgacgataatgtaatgtaagtgCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118824 lncRNA upstream 176841 1566425 ~ 1566701 (+) True G95279
TU118823 lncRNA upstream 178300 1565035 ~ 1565242 (+) True G95278
TU118815 lncRNA upstream 200112 1540003 ~ 1543430 (+) True G95270
TU118813 lncRNA upstream 203652 1539638 ~ 1539890 (+) True G95268
TU118803 lncRNA upstream 203984 1518658 ~ 1539558 (+) True AMCG00015077
TU118984 lncRNA downstream 213103 1985985 ~ 1995456 (+) False AMCG00015092
TU118986 lncRNA downstream 217746 1990628 ~ 2080837 (+) False G95415
TU118985 lncRNA downstream 305089 2077971 ~ 2080837 (+) True G95415
TU119033 lncRNA downstream 322993 2095875 ~ 2097334 (+) False AMCG00015096
TU119049 lncRNA downstream 357856 2130738 ~ 2131893 (+) True G95464
AMCG00015085 mRNA upstream 960 1725620 ~ 1742582 (+) True AMCG00015085
AMCG00015084 mRNA upstream 24768 1702520 ~ 1718774 (+) True AMCG00015084
AMCG00015082 mRNA upstream 61301 1678730 ~ 1682241 (+) True AMCG00015082
AMCG00015080 mRNA upstream 84610 1637781 ~ 1658932 (+) True AMCG00015080
AMCG00015081 mRNA upstream 146680 1592823 ~ 1596862 (+) False AMCG00015081
AMCG00015089 mRNA downstream 15955 1788837 ~ 1807672 (+) True AMCG00015089
AMCG00015086 mRNA downstream 77003 1849885 ~ 1870853 (+) True AMCG00015086
AMCG00015087 mRNA downstream 108362 1881244 ~ 1886142 (+) True AMCG00015087
AMCG00015090 mRNA downstream 159528 1932410 ~ 1940759 (+) True AMCG00015090
AMCG00015092 mRNA downstream 222436 1995318 ~ 2021856 (+) True AMCG00015092
TU118826 other upstream 146647 1582194 ~ 1596895 (+) True AMCG00015081
TU118644 other upstream 804556 879089 ~ 938986 (+) True G95117
TU118603 other upstream 1196797 546229 ~ 546745 (+) True G95078
TU119071 other downstream 428055 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 884603 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 891622 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 1033929 2806811 ~ 2808495 (+) True G95693
TU119344 other downstream 1047585 2820467 ~ 2823760 (+) False G95704

Expression Profile