RNA id: TU118985


Basic Information

Item Value
RNA id TU118985
length 2845
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G95415
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 1990628 ~ 2080837 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGGATTCAGTGTATTTACAGAGAGCGGCTTGCTGCCGACACAACACAGAGCAACACATCGACGCGgccacaaccacaacaaaatcaTCAGGACAGTCTTAAGTATTAAGTAAGAAtcttaatagtaataataataacccaacATAACAGAAGAGAGAGTAGTTGATATGTACAGTTCACCAGGAGCAGAAACACAGAGgaaagaggggagggaggagagatgGCTCCAAGTCAGGGAGGAGTATCCAATCTTGTTTCTGGACttgatttttattgttttatttatttatttttaactctggTGAAAGAAATTAAACCCAGTTCTCCTTTATCAGGAGACAGTCGCAGTTGTGTCACAGCTTCATATCAAcccttaaaaacaataacagcaggaaaaataacaataattaatatgttttctgtgttgaaaTGCCAGTGTTCCCACACAGAAATGGACACCCAGTCAGTCACTCTCAAACTCACTCTCATCCTCTTGCACACACACTAACAGTACCAGCTCTAAAGAACATTGGGGGTGGAGCAGTGAGTACAGTGCATCAGTACAGTGTTTATATCAGTAGTGTATTTGTGCGCACAGTAAAGTTGTGGGTTTTAAGACCAAGAGACATGGTAACAGACAGGGGGAggggatggggagagagagtgtatgttagtatgtaaatgtgtgtatgtcaATGTGTATGTACATCAGTACTGCTGTTCACAAACCTCTTCACCCCATCTGTTTTAGTGACACCCTGACCAGTCTCTCTGggaatagtaatagtaataataataatacattaaaaatcatCCTCagaaattgtcatttttattttataaattgtttttcagTGGGAGTGACCTTTCAcacaccgagagagagagagagagatagagttAGAGAGAGGGTAACATTTTTAGTCTCTACACTGTCccctactgtactgcactgcccTGTGTGTACAACTGCCCCATAGCCCCCATCTTTGGTACTGCTCCCACACTCAGTCCTATCCAATCACCCCTGCtccaataaatataataaatacgtTATCTATAATTTATAGACTTTGATCAACACAATCTTCGGCACTGTAGAAGTCTCCTAACCAATATGTTCACCTCATCTTTTCTGTCTATcatccattctctctctctctctctctctctctctctcactcacacggGCAATACAATAACGCCACTAGTTCAGGTAAattgttttccctttatttgAATGGTTACTAAGTTTATACACCAATGtcaatgtttattgatttatatagaaTATGCTTATATCCACAGACATCTGTATTTAAAAGGTCCcttctgaaataattaatattaagacTTTGTACGAACCAGAGTAGTTATTTAAAATTAGCAGCAGCTGCACTACCACAGTTCAGCCACCAGGGCCCGCTATTGCTACACAAGACATTCCCCCACGAGACCTGTTAAAAACCACTGTAAAATGGTTTcccaattaataataataataataataataataataatatggaaaacaaaagcaagcaaatgttttttttggtataatttaataaaagtataaaatttACAACCAGAAAGCAGAAtgctctccctcccctcccctctctctctctctctctacttctGAGTTTCTAAAACAATTCCGGCTATGGATAACCGTatgatataaaaatgttaaaatgagaaaattaatAGTGCCTCCACATTGCAGCAACAGCACTCCACCCAGACACAGGCCACATAACTCCATAGTCCTCAATTAGGTCCTAtagtacagcacaacacagtacagtacagtacagtacagcatggTCTCCAGCCTGGGTCCTATAGAGCTACAGTACGGTACAGGTTAATACAAtacaggaccagggctggagaccatgctgtactgtgctgtagctCTGCAGAGCTGGAGACCCCTGTCAGGCAGTGTATTGTGGAAGGGGGGGGATGGGGCCAACagaatttgctttaaaaagaaaaaaaatatatatatatatgacactcTTCCtggttgtaaaaaaacaaaaatctacacatttaaaataaataaataaacctcgtgtttataaaataaaattaacaaaagtaAATACCCGGCCCCCCCAGTCCCTCCCTTGTCCCCCTGCCATCACCACCACTACTACcatcagcattattattattattattattattattattattaacattaatatcaACTGACTGATAATGACAGAGCTTCCTTAGTCACTGCTGGACTGTGACAGACCAGACTCTGACAGACTGGACAGGACAGTGAACTTGATAAAGAGATTATGAGCAGTCCAGTCACAGGGCAGCAGTGTCCAGTGCAACAAGCccagtacagtccagtacaaTGCAGTCAATGTCCAGTACAACACAGTCCAGTACGGACACACTGGACAATTGAACACGGTCCAGTGTGCAGTGGCTGTAGCCGccctgtcagtgtcagtgtccagACAGGGTAAAActacagttaaaacaaacatttgacaGTAACATTAAGAGAACTGGATGTCAGTCGGGGATCTGAGAGGGTGTggggtgcagtgtgtgtttgtgtatgcatgtatgtatgtatatgtgtgtgtgtttatatgtgtgtgtgtgtgtgtgtgtgtgaaatttgTTGTTCTTAGTCTCTCCTTCTGTCTGGAGCCGAAGGGGgttaggggtggggggggtgggggggttgagaAGGAGGGatgtgagagacagacagagatagagggagggaggtagggAGGGGTGCTCAGGTGCTGTTGTTTAGAGGTCCTGGTGCTGGACTGGGCTGGGCGGGACTGCTGTCTGACaccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118984 lncRNA upstream 82515 1985985 ~ 1995456 (+) False AMCG00015092
TU118847 lncRNA upstream 305089 1743542 ~ 1772882 (+) True G95298
TU118824 lncRNA upstream 511270 1566425 ~ 1566701 (+) True G95279
TU118823 lncRNA upstream 512729 1565035 ~ 1565242 (+) True G95278
TU118815 lncRNA upstream 534541 1540003 ~ 1543430 (+) True G95270
TU119033 lncRNA downstream 15038 2095875 ~ 2097334 (+) False AMCG00015096
TU119049 lncRNA downstream 49901 2130738 ~ 2131893 (+) True G95464
TU119079 lncRNA downstream 136363 2217200 ~ 2218096 (+) False AMCG00015102
TU119080 lncRNA downstream 136363 2217200 ~ 2218096 (+) False AMCG00015102
TU119109 lncRNA downstream 187493 2268330 ~ 2268552 (+) True G95514
AMCG00015092 mRNA upstream 56115 1995318 ~ 2021856 (+) True AMCG00015092
AMCG00015090 mRNA upstream 137212 1932410 ~ 1940759 (+) True AMCG00015090
AMCG00015087 mRNA upstream 191829 1881244 ~ 1886142 (+) True AMCG00015087
AMCG00015086 mRNA upstream 207118 1849885 ~ 1870853 (+) True AMCG00015086
AMCG00015089 mRNA upstream 270299 1788837 ~ 1807672 (+) True AMCG00015089
AMCG00015096 mRNA downstream 10838 2091675 ~ 2103854 (+) True AMCG00015096
AMCG00015095 mRNA downstream 36183 2117020 ~ 2137284 (+) True AMCG00015095
AMCG00015102 mRNA downstream 136854 2217691 ~ 2227951 (+) True AMCG00015102
AMCG00015100 mRNA downstream 170703 2251540 ~ 2252833 (+) True AMCG00015100
AMCG00015103 mRNA downstream 178359 2259196 ~ 2259829 (+) True AMCG00015103
TU118826 other upstream 481076 1582194 ~ 1596895 (+) True AMCG00015081
TU118644 other upstream 1138985 879089 ~ 938986 (+) True G95117
TU118603 other upstream 1531226 546229 ~ 546745 (+) True G95078
TU119071 other downstream 120100 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 576648 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 583667 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 725974 2806811 ~ 2808495 (+) True G95693
TU119344 other downstream 739630 2820467 ~ 2823760 (+) False G95704

Expression Profile