RNA id: TU119049



Basic Information


Item Value
RNA id TU119049
length 1156
lncRNA type intronic
GC content 0.45
exon number 1
gene id G95464
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2130738 ~ 2131893 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCATGCTTTGATCGATcgctcaatcaatcaatcaatcatccAATAAATGGATCATTCAGGATTCGGTGAAATGAAGTGACCGGGAAATAGACTTTCCTGGATTGacaatttttatttcaatttttttgggACGACAAAATGAGACAAAAGGATATCAACTACAACAAAagacacgcgcacacacatgcacatgcgtGTAATGCATTGTTAAACATTGGCATGCGATGGACAGGACTCTGTGCTTCTGCTGGCTAACACCTCCTGTTTCGCTGTCCTGTCCTCTGTAATCTGGGGTTGGGGATTTCGGTGTCTTGATCATGAGGGATGGTGAAGGAAGGGGAGGAAGTGTGAGGGCAGGGGGGAATGGGCCGGGGGTATTGGGACAGAGTTCGGGACACTCGCAGCCCCTGAGAGAAATGGGGACAGAGGAGCTtagactgacacattgactggacactacagtacactgcactGATAGGCTTAATATAGTCACtaactggacactacagtatacTGACAGTGAAAAAGGGAGGCGGAGTTATGACTGTACAGTACTACACACTCGAATAAGGAGATTAGACTGTGAGGCCAAGTGTCCTGATTATGCCCCAGATCTCTCCCCAccctgatctttttttttttttttttctttcccctctctccctctccctcccagtTGATGCTGGTGAACATTTGgcaaatagtttttatttatatatgtattaatgaaATTTCTCAGTCGCACACTGGACACTAAAGAGCGGCGGGAATGGTGTAAATGGGGAGAGAGCAAGAGGTGTCTGTTTGTCCTGTGTGCGCATGTCTGTTTGCTCTCGCGCTCTCCTCTTCCCCACCCCTGGCTCTGGGCTGCATTTTTGTCAGACTGCTATATTGCACACTGTTCCTGATCAcgatggggatgggggggggatTCTTTGAGGGAGGGGTTGACCCTTATGTTAGGACCCCCCTGCTACCATAAATCTCATCACAATCTGTGTTCTGTAAATACCACTTGAGCATGCCTGTAAATATTCCATAATTgttctgtgattttgttttatttcttttaatatgttttagaaGTTTTGTTGTTGGAAGGAAATTGTGTGCTAGCGCCGAATACCatctttgtacattttctgtgattaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU119033 lncRNA upstream 33404 2095875 ~ 2097334 (+) False AMCG00015096
TU118986 lncRNA upstream 49901 1990628 ~ 2080837 (+) False G95415
TU118985 lncRNA upstream 49901 2077971 ~ 2080837 (+) True G95415
TU118984 lncRNA upstream 135282 1985985 ~ 1995456 (+) False AMCG00015092
TU118847 lncRNA upstream 357856 1743542 ~ 1772882 (+) True G95298
TU119079 lncRNA downstream 85307 2217200 ~ 2218096 (+) False AMCG00015102
TU119080 lncRNA downstream 85307 2217200 ~ 2218096 (+) False AMCG00015102
TU119109 lncRNA downstream 136437 2268330 ~ 2268552 (+) True G95514
TU119115 lncRNA downstream 141401 2273294 ~ 2334520 (+) True G95516
TU119133 lncRNA downstream 218753 2350646 ~ 2351071 (+) True G95534
AMCG00015096 mRNA upstream 26884 2091675 ~ 2103854 (+) True AMCG00015096
AMCG00015092 mRNA upstream 108882 1995318 ~ 2021856 (+) True AMCG00015092
AMCG00015090 mRNA upstream 189979 1932410 ~ 1940759 (+) True AMCG00015090
AMCG00015087 mRNA upstream 244596 1881244 ~ 1886142 (+) True AMCG00015087
AMCG00015086 mRNA upstream 259885 1849885 ~ 1870853 (+) True AMCG00015086
AMCG00015102 mRNA downstream 85798 2217691 ~ 2227951 (+) True AMCG00015102
AMCG00015100 mRNA downstream 119647 2251540 ~ 2252833 (+) True AMCG00015100
AMCG00015103 mRNA downstream 127303 2259196 ~ 2259829 (+) True AMCG00015103
AMCG00015101 mRNA downstream 144819 2276712 ~ 2287242 (+) True AMCG00015101
AMCG00015105 mRNA downstream 322115 2454008 ~ 2461387 (+) True AMCG00015105
TU118826 other upstream 533843 1582194 ~ 1596895 (+) True AMCG00015081
TU118644 other upstream 1191752 879089 ~ 938986 (+) True G95117
TU118603 other upstream 1583993 546229 ~ 546745 (+) True G95078
TU119071 other downstream 69044 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 525592 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 532611 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 674918 2806811 ~ 2808495 (+) True G95693
TU119344 other downstream 688574 2820467 ~ 2823760 (+) False G95704

Expression Profile