RNA id: TU119216


Basic Information

Item Value
RNA id TU119216
length 1993
lncRNA type intronic
GC content 0.36
exon number 1
gene id G95603
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2629667 ~ 2631659 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCTGGCAGCGTTCCTGAGGAATCTTAGCCCATTCCTCATGAGCAATGGCCTCTAGTCCAGTAATATTCTTGGGTTTGCGAACTGCAACCGCCTTCTTCAAATCCCNNNNNNNNNNTTCTATGGGGTTCAAGTCAGGTGCCTGTGATGGCTACTGTAGAATCTTCCAGGATTTCTTCTGCAACCAAGAATTGGTGGAATTTGAGGTACGcttgggatcattgtcctgtTAGAAGGTCCAATGACGCCCAAGCTTCAGCTTCCTCACAGACGGCATGACATTTTCTCCTATGATTTTCTGATACTTCAATGAATCCATCTTNNNNNNNNNNCGCTGCAGGTTTCCAGTGCCAGACAGGACCGGCCCGTGGCATAGGCAGAATAGACAAATGCTAGGGGCGCCGTCCATCCATATGAGTGAagattgtttttacttttactaatactattaatttgaaatattaccaaaaaacgaaagcccccacaacaacataattacatagcttattaggccatattttctgtgttgcccGCAGCGTCCCCCCAGCCTGGCGCTCTCATAGTTAGACTGACCTGATTGTGGGGGGGCGAGTTCAGTTATCTGAAGCAGTGAGTGACActgaacacaaaacataatCAATTAGCATCAGTAGCCACTTNNNNNNNNNNCAAAAAGACCAAAGCCCTCTGGTGCCCAGGCAACATAAagaagaggagaagaggaggaaaaacGGGATAAGGGCAGaggtgatgtgatgtgatgaatgaATAGTGTATCTAATTGCTTAGTTACCGTTGGAGCAGTGTTACTACTAGCAGATTACTTTGGATGATACTAGTAACGTTCGCTACTTTAAAGAGCTAGCTAGAGTTAATGTCAGTTACTTTTACCTTACATTCATTATGGGATGAATTAGCCAATCCTTAACAATTAGCCAATCCGAGTGCCGAACTGCCACGCCTGGAGATATTACACTTTCTGagttttgaaaataagtttaCCCTGGCGTTTTATGTGTAGGTTGNNNNNNNNNNAGTTATAGTTTAGGTCTACAAAACAGAcagtaattgtttattattgatatgattgtgtgtgtgcaacaAAATGTAAGTAGACATGTTTGTCTATGTTTGGTATAAGTTATGGCCGCTACATATTGAGAATAGCAATGCTAGTCTNNNNNNNNNNTGAGTAATTATCTACTGCGTCACCATGTGGTCATAATGCGAACTGcgttgatttataatatattatttattaccgTTATCTATTGTTTACATGTCTATTGAATTGAAGACAGTGTATTATCGATATGAATAACGGTTATAAGTTTATATGATTTAATCTTGGTTAAGGTAATTTCTCAGCATCTANNNNNNNNNNGATAGCATAGATCCATAGGTTTGCATTTGTGCTGCATGTAAAGTCATTTGAGTGTATTGGCTCTGCTGTCAgaactgtgtatatttgtattattattctttgcatGATCATTggttatattgattattatacGACTGANNNNNNNNNNTGTTATTTCTTTGTAGAACCACACATACGTATTCATCAAacttaatattacaattactgaaGACACCGTTTTGGATATAGTGCTAGTGATGCAATAAAGGGACGCTGTTTGGAACGAATGAGAATTGTGCATCCTTACCGAACCCCACAACGATCACACCTTTTGAACGATCAGCTATTTAACTNNNNNNNNNNCCTCCATTACCTATAAcataattttgagaaatacaccTTTTCTTTAAAGTGTGCTGCACGAACCATCCACTTATTTTATAATTCGTTTTATGTGacttgtttgctgcaagaaaggCATGGCGAGTAAGGCTGTAGANNNNNNNNNNattatgcatattgcactaaggtgtctgtaatatagttttttatttatattgtatttataattcgttttatgtcacttgtttttattttgttttgtttttttctaaaataaagaaaatctcaa

Function

GO:

id name namespace
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119133 lncRNA upstream 278596 2350646 ~ 2351071 (+) True G95534
TU119115 lncRNA upstream 295147 2273294 ~ 2334520 (+) True G95516
TU119109 lncRNA upstream 361115 2268330 ~ 2268552 (+) True G95514
TU119079 lncRNA upstream 411571 2217200 ~ 2218096 (+) False AMCG00015102
TU119080 lncRNA upstream 411571 2217200 ~ 2218096 (+) False AMCG00015102
TU119234 lncRNA downstream 25421 2657080 ~ 2657479 (+) True G95617
TU119257 lncRNA downstream 44813 2676472 ~ 2676725 (+) True G95635
TU119282 lncRNA downstream 65588 2697247 ~ 2697826 (+) True G95652
TU119284 lncRNA downstream 66388 2698047 ~ 2698695 (+) True G95654
TU119299 lncRNA downstream 108229 2739888 ~ 2742250 (+) True G95669
AMCG00015111 mRNA upstream 106470 2520324 ~ 2523197 (+) True AMCG00015111
AMCG00015105 mRNA upstream 168280 2454008 ~ 2461387 (+) True AMCG00015105
AMCG00015101 mRNA upstream 342425 2276712 ~ 2287242 (+) True AMCG00015101
AMCG00015103 mRNA upstream 369838 2259196 ~ 2259829 (+) True AMCG00015103
AMCG00015100 mRNA upstream 376834 2251540 ~ 2252833 (+) True AMCG00015100
AMCG00015120 mRNA downstream 90950 2722609 ~ 2728315 (+) True AMCG00015120
AMCG00015128 mRNA downstream 220799 2852458 ~ 2857757 (+) True AMCG00015128
AMCG00015134 mRNA downstream 299719 2931378 ~ 2933831 (+) True AMCG00015134
AMCG00015133 mRNA downstream 321084 2952743 ~ 2962840 (+) True AMCG00015133
AMCG00015142 mRNA downstream 335268 2966927 ~ 2971345 (+) True AMCG00015142
TU119071 other upstream 412565 2200937 ~ 2217102 (+) True G95486
TU118826 other upstream 1032772 1582194 ~ 1596895 (+) True AMCG00015081
TU118644 other upstream 1690681 879089 ~ 938986 (+) True G95117
TU118603 other upstream 2082922 546229 ~ 546745 (+) True G95078
TU119235 other downstream 25826 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 32845 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 175152 2806811 ~ 2808495 (+) True G95693
TU119344 other downstream 188808 2820467 ~ 2823760 (+) False G95704
TU119395 other downstream 333642 2965301 ~ 2967327 (+) False AMCG00015142

Expression Profile