RNA id: TU119226


Basic Information

Item Value
RNA id TU119226
length 1115
lncRNA type intronic
GC content 0.43
exon number 1
gene id G95612
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2648459 ~ 2649573 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGACCGGCAGTGTGTTGTCAGTACGCTGCTCTTTTAAATGATCCCACCTGGATCTAGGCATGAATTAGCGTTTTTTGACACAGCTGCAGTCGTCACAGTTTCTGCTTACTATGCAGAAAACCTTAGGTGCAGTATTTCTTCCTACATAAACTTGTAGTTTCTTAGCCATGGTTGCATGTTCTGttaatcaaagaaaacaatagttAAGGGGGTTGTAGGTGGTGTTTTACatatgtgaatatttgtaattgtagaACCTGTATCAGGTCAGAGCTAATAGTCACTTTGAGCAAAGGTGCATTTCTGTCCATTGGACACCAACATTGGCAGACTCTGGGTGAAATGCATTGGTAGCCGTCTTCAAATGGCAAGATGGTGCTCACCCCTGTTCAGCGAGGTGAGCCCACTCTCCCTACCAGTCCTCCCTGTCCCCTCACACTGCGATGGCATTCTCCTGGCCCTGATCTTCTCCACCACTGCCTAGTTGTCACTTGCTCAGCGTTGGGGGTGCGTGGTTTAGACCAGGTGAGGTTGCTGTGATTGAAGGGGGAGTTCCTAGGGGATTCAGGAGTGCTCATCCTGATGAATAAGTTTATGAATATTGGTTGCATTCATGTAGTGCAGATTTCCAcggttctgtgcagatctgtgcagaactgtcaAACTGCTATATGAACATGACCATTGCTAATGCCTTTGAGCTCAGGGCTGCACAGTGGATTAAAACATTGGGAAGGGGAAGGTGGGACGTAGTCGGACAttcctcacccccccccccaggaggACTGACTGAGGAACATTATGAAATAGTTGGCTTGGGTCACACAGTTTGACGACTGGCCTTTCCTTTATCTCGGAACACCACTATTTTTAAGTACTGTTGTAAAAATCAAAattgtcaaatgttttaattgtgtgtatgtgtaataaatgtatagtgtgtgtgtgtgtatctgtatacaTCAATATAATTTTGGAcctaatgaaatacaaatataaaaaaacaaaacctgtatacgagaaaaaaaaactgtgcctGGCCAATttgtaaagtgtatttaaaaaataaaccaataaactgttactgtgtgtgggctgtttcttttctttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119218 lncRNA downstream 15241 2632980 ~ 2633218 (-) True G95605
TU119143 lncRNA downstream 256587 2391569 ~ 2391872 (-) True G95544
TU119106 lncRNA downstream 384989 2263123 ~ 2263470 (-) True G95511
TU119103 lncRNA downstream 394729 2253437 ~ 2253730 (-) True G95508
TU119088 lncRNA downstream 447126 2140436 ~ 2201333 (-) False AMCG00015099
TU119258 lncRNA upstream 26866 2676439 ~ 2676679 (-) True G95636
TU119259 lncRNA upstream 27351 2676924 ~ 2677129 (-) True G95637
TU119283 lncRNA upstream 47679 2697252 ~ 2697823 (-) True G95653
TU119306 lncRNA upstream 92745 2742318 ~ 2742602 (-) True G95675
TU119422 lncRNA upstream 224534 2874107 ~ 2875242 (-) False AMCG00015140
AMCG00015119 mRNA downstream 7210 2639239 ~ 2641249 (-) True AMCG00015119
AMCG00015118 mRNA downstream 11038 2628687 ~ 2637421 (-) True AMCG00015118
AMCG00015112 mRNA downstream 67478 2578074 ~ 2580981 (-) True AMCG00015112
AMCG00015114 mRNA downstream 115888 2528675 ~ 2532571 (-) True AMCG00015114
AMCG00015113 mRNA downstream 158679 2487161 ~ 2489780 (-) True AMCG00015113
AMCG00015117 mRNA upstream 11354 2660927 ~ 2669986 (-) True AMCG00015117
AMCG00015125 mRNA upstream 26208 2675781 ~ 2685577 (-) True AMCG00015125
AMCG00015124 mRNA upstream 36186 2685759 ~ 2693630 (-) True AMCG00015124
AMCG00015126 mRNA upstream 48687 2698260 ~ 2712770 (-) True AMCG00015126
AMCG00015123 mRNA upstream 69023 2718596 ~ 2720790 (-) True AMCG00015123
TU119135 other downstream 297409 2350660 ~ 2351050 (-) True G95536
TU119057 other downstream 511007 2136420 ~ 2137452 (-) True G95472
TU119027 other downstream 555221 2090529 ~ 2093238 (-) False AMCG00015098
TU119032 other downstream 571092 2074142 ~ 2077367 (-) False AMCG00015094
TU118971 other downstream 668583 1964833 ~ 1979876 (-) False AMCG00015091
TU119249 other upstream 16652 2666225 ~ 2670244 (-) False AMCG00015117
TU119334 other upstream 164074 2813647 ~ 2816067 (-) True G95700
TU119414 other upstream 238677 2888250 ~ 2891696 (-) False AMCG00015135
TU119447 other upstream 328624 2978197 ~ 2980408 (-) True G95791
TU119524 other upstream 536596 3186169 ~ 3189093 (-) True G95850

Expression Profile