RNA id: TU119334


Basic Information

Item Value
RNA id TU119334
length 920
RNA type TUCP
GC content 0.48
exon number 4
gene id G95700
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2813647 ~ 2816067 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gAACAAGTTAAAGTAggtacattattaataaaaggATTAACGCTTATTTTCACAACAAAAACGTggaagggagagatggagaggggaaggcagagagagagattaaaaacacacattcccAGCACAAAATAAGATACAGAGGCACAGAGAAAgggggaggaaggagagggagagagagcaagatAAGGACTGTTTGTCCATTACTATGTTGCTGATGTCCACCACCCGCTGGGTCGATGGCACCGGGCTCGCTGGAGGTTAAAGGGCTGTTGGGTGACGTTGCAGGACAGTGGGGTATATTAGGGAAGCGGCACCGAgttgcagaaaacacacaaaaacaaagcgGGACACATATACCTTAATTATTAAGAATTTTAGAACCAGGGAAATATGAAGCTGCCAGTCGCCCTTGCCGTGCTGGTGCTCGTACTGGCCACTCACACAGatGCTGAGGAGCCCACCATTGAGGAGAGGTTCAATACGTTCCAGACGCAGGTGAAAGAATTCACTGCTGGCCTGACAGATAAGACCAAGGCTGCTGTGGACCAGCTCCAGCAGAGCAAGTTCATAGTCACCACCAAGGACTGGTTTGCAGAGCAGTTTGACAAGGTGAAGCAGAAACTGGATGAGACCTTTAACAAGCAGTGAGGACCCCCACTCCTGTGCCACCCCCTTCCCTCATCCCTCCTCTCTCacactgcctgtgtgtgtgaactgcAAGAGGGAGGAATTCACTTTTTCTTGTACTATTTCTTTTCTGTGACAGGGCTTTCGCCAACTGTGCTGTGAAATGTGTTAAAGTGATTCAGGACACACTGATGCCTGCAGTGATGCTGGGGCAATAAAGACATATGACAAACAACACACTGCTGTCTCTGTGCTTCTGTACAGTGAATTCCCAATGGGCCACTGGGGGAAAG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119306 lncRNA downstream 71045 2742318 ~ 2742602 (-) True G95675
TU119283 lncRNA downstream 115824 2697252 ~ 2697823 (-) True G95653
TU119259 lncRNA downstream 136518 2676924 ~ 2677129 (-) True G95637
TU119258 lncRNA downstream 136968 2676439 ~ 2676679 (-) True G95636
TU119226 lncRNA downstream 164074 2648459 ~ 2649573 (-) True G95612
TU119422 lncRNA upstream 58040 2874107 ~ 2875242 (-) False AMCG00015140
TU119436 lncRNA upstream 120227 2936294 ~ 2939095 (-) True G95780
TU119434 lncRNA upstream 127020 2943087 ~ 2945852 (-) True G95778
TU119442 lncRNA upstream 144268 2960335 ~ 2963345 (-) True G95786
TU119456 lncRNA upstream 177607 2993674 ~ 2994155 (-) True G95798
AMCG00015132 mRNA downstream 4931 2771667 ~ 2808716 (-) True AMCG00015132
AMCG00015127 mRNA downstream 51943 2759997 ~ 2761704 (-) True AMCG00015127
AMCG00015121 mRNA downstream 71587 2739200 ~ 2742060 (-) True AMCG00015121
AMCG00015122 mRNA downstream 78442 2732786 ~ 2735205 (-) True AMCG00015122
AMCG00015123 mRNA downstream 92857 2718596 ~ 2720790 (-) True AMCG00015123
AMCG00015131 mRNA upstream 3805 2819872 ~ 2824676 (-) True AMCG00015131
AMCG00015130 mRNA upstream 14519 2830586 ~ 2834416 (-) True AMCG00015130
AMCG00015129 mRNA upstream 20663 2836730 ~ 2844513 (-) True AMCG00015129
AMCG00015140 mRNA upstream 59119 2875186 ~ 2878992 (-) True AMCG00015140
AMCG00015135 mRNA upstream 71517 2887584 ~ 2891627 (-) True AMCG00015135
TU119249 other downstream 143403 2666225 ~ 2670244 (-) False AMCG00015117
TU119135 other downstream 462597 2350660 ~ 2351050 (-) True G95536
TU119057 other downstream 676195 2136420 ~ 2137452 (-) True G95472
TU119027 other downstream 720409 2090529 ~ 2093238 (-) False AMCG00015098
TU119032 other downstream 736280 2074142 ~ 2077367 (-) False AMCG00015094
TU119414 other upstream 72183 2888250 ~ 2891696 (-) False AMCG00015135
TU119447 other upstream 162130 2978197 ~ 2980408 (-) True G95791
TU119524 other upstream 370102 3186169 ~ 3189093 (-) True G95850
TU119528 other upstream 380354 3196421 ~ 3197189 (-) True G95854
TU119619 other upstream 533812 3349879 ~ 3350442 (-) True G95921

Expression Profile