RNA id: TU119434


Basic Information

Item Value
RNA id TU119434
length 1746
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G95778
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2943087 ~ 2945852 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttcctccctctctcttctccctgtTCGGCGCAATCGCTTAACAATGTGCCCCCTAAAGCCCGGCGCGTTTTGATGATGTCAGTGCCCAGCGAGCCAATAGGTCGGGCGGTCGCGCAGGAAGAGCCCGCCTGCAAAACTTGTGCGTGTTACAGATTTCacttctgtctctctttttttctgtctccGTGTCTCCTCGCGTTAAGTCGTTTATTTGTCCTTGCTTGTGAATGCTTGTTCCGcccatggggggggggggagctgggATTGACGAAAATGGCAATAAATAGGCGCCCTCCTCCACTTCGcgccgccccccccaccaccacataATAAACCATCGACTTGTCAGGTTACCTCGTGTTCTAAAATGCAGTGTGGCAGCCATTACAGGACAGCTAGACAGGAAACTGCAGCAACAAAAGATGGAGGACAGTCAGCGAGATCAGgtCTTCCTTTAAAACAGAGATGCCCTCCCATCCTGGTCCTTGAGAGACTGCAGTCCAGCCTCTCCATGTTCCTTCACTCCACCCAATACTCTACAACTACCTTATTTGTTAAACTACCTTAATTGGGTGTGCTAATTGATTGCCTAATTAGTCTCCATTACCCCCATGCGTCCATTCAGGGTTTATCTGTGATGGATGATATAGTGTCCACAGTTTGTTAGTTTGTCTCAGTATGACTGTCCTAACAGGCCCAGTGTGACTCTGTGAGACTCAGGGATTCATAGAGGAGCTGGGAGACACACTTGGACTGGGGTACCCCCCAGATCTTGGATTGGGGACCCCTGTATTCGGGCAGAGAGACCTCAACAAACGATGGGGGGCTTCTCCAGATGTGGCCCCAGAGATGTTACTTGGGTTTCGGGGGAATCAGCCTGTAAACCGCCCCCTGAGTGTGGTGTGCTAGTGGAGTGtggtatttgtatgtgtgtgcagtgtggaggtgtgtgtgtttgtggaatGTGCTTTGGAGCACTGTATTTGTGTAGTGTACAATGAAGCGTTATGTTTGTGGAGTGTGCTGTGGTGCATTGTGTTTGTGGAGTGTGCtgtgttgcattgtgtgtgtaaaGCTTGCTATGCAGCACTGTTTGTggagtgtgctgtgctgtgttgtgtttgtggagTGTGCTGTGGTGCATTGTGTTGGCACCCCACTTCTGCAACCTATAGGTAGCATATCCCCAAGGTGATGCCACACCTTGAACAGAAGTGTTGATTTTCTAGTGTAATtttgatggtgtgtgtgttcagttgtGGGAAGGAAGGGTCTCTGTGTCCTGGACAGCTGTGGAATTAGTACTGTAGAGTTTCCGGTTCAGTATCCTGAAAGAAGCTTCCCAGATATCTTTGCCTAGATATCCCCTGGACTCCTGTTTAACAGCAGGCATCCTAGGCATCTGGATCCAGCTTTCCCCTTTAAAAGTACCCCACTGTACTACTGTGGTGCTGCATGGCATATCATAATACCTACGGTGGTCTACCCAATACCTTTATGTTGTACAATGGTGtaccaaaaaaacatacatggtGCATCCGGTAACTAGAATGTTCGGTGGAACACCTGTAGCACAGACATGTGACATAAGGAGATCTCCAATATCCTGGTACATAATCAGGATAATTAAATACCATGGTATTCCAAATTAAcaaccttttttcttcttgtccCAGAGTGAACAATTAGtttctattaaaaatgtaccatggatgtttgtttgtttattggtttctttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119436 lncRNA downstream 3992 2936294 ~ 2939095 (-) True G95780
TU119422 lncRNA downstream 67845 2874107 ~ 2875242 (-) False AMCG00015140
TU119306 lncRNA downstream 200485 2742318 ~ 2742602 (-) True G95675
TU119283 lncRNA downstream 245264 2697252 ~ 2697823 (-) True G95653
TU119259 lncRNA downstream 265958 2676924 ~ 2677129 (-) True G95637
TU119442 lncRNA upstream 14483 2960335 ~ 2963345 (-) True G95786
TU119456 lncRNA upstream 47822 2993674 ~ 2994155 (-) True G95798
TU119476 lncRNA upstream 179579 3125431 ~ 3127592 (-) True G95814
TU119642 lncRNA upstream 526355 3472207 ~ 3472926 (-) True G95933
TU119672 lncRNA upstream 656752 3602604 ~ 3603677 (-) True G95960
AMCG00015136 mRNA downstream 14810 2925485 ~ 2928277 (-) True AMCG00015136
AMCG00015139 mRNA downstream 20575 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015138 mRNA downstream 32673 2905065 ~ 2910414 (-) True AMCG00015138
AMCG00015137 mRNA downstream 39455 2893323 ~ 2903632 (-) True AMCG00015137
AMCG00015135 mRNA downstream 51460 2887584 ~ 2891627 (-) True AMCG00015135
AMCG00015144 mRNA upstream 54964 3000816 ~ 3008611 (-) True AMCG00015144
AMCG00015154 mRNA upstream 289653 3235505 ~ 3239525 (-) True AMCG00015154
AMCG00015153 mRNA upstream 296258 3242110 ~ 3247588 (-) True AMCG00015153
AMCG00015152 mRNA upstream 305129 3250981 ~ 3268761 (-) True AMCG00015152
AMCG00015158 mRNA upstream 357905 3303757 ~ 3313326 (-) True AMCG00015158
TU119414 other downstream 51391 2888250 ~ 2891696 (-) False AMCG00015135
TU119334 other downstream 127020 2813647 ~ 2816067 (-) True G95700
TU119249 other downstream 272843 2666225 ~ 2670244 (-) False AMCG00015117
TU119135 other downstream 592037 2350660 ~ 2351050 (-) True G95536
TU119057 other downstream 805635 2136420 ~ 2137452 (-) True G95472
TU119447 other upstream 32345 2978197 ~ 2980408 (-) True G95791
TU119524 other upstream 240317 3186169 ~ 3189093 (-) True G95850
TU119528 other upstream 250569 3196421 ~ 3197189 (-) True G95854
TU119619 other upstream 404027 3349879 ~ 3350442 (-) True G95921
TU119671 other upstream 658751 3604603 ~ 3607192 (-) False AMCG00015164

Expression Profile