RNA id: TU119436


Basic Information

Item Value
RNA id TU119436
length 2802
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G95780
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2936294 ~ 2939095 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAGAAGTAGAGTTGCCCCTGTAAAGGCCAGTCTGTACACTAGAGTTACAGGTCTTAAAAGGAGGTCTCGGGAGCCATGTAGTCACAGTCAGGGGTGATAAAAAAGGCCTGTTAGTCAAAGAGCAATATCTGTTTGAAGTGATGTCATAAAatgatatacaaatatacatatgtatatatatatatatatatatatatatatacacacacacacaggtgttgCTGTTAAGGGTCTCTCTGGGGCCTTATAACCTCTGAGAGTAGGAGGGGAAAGAGCTGgactgaattaaaaatgaaaaaggacaaAGTTGCTTGTTAAAGGGAGAGTGAAAAGTGAAGCACAAAAGAGCTGCATCTGAGAGACATTCCAGCCTGTGCAACGGGGCAGCAAATCCAGAGCAGGGTAGGAGAGGAGCCGCGGGTCAGGGTTGGTTGGATATTATCCGAGCCGgagatttacaaattaaaataacttgctATGGAGTAAAAAAGCGAGCAATTAAGCCCCACAGCCAGGCTGAATGTAGCAGCGATGTGGGATAAAAGGCCCAGAAGCCGCCGCAGCTCTCCATGACCAGGGTCAGCCATCCCCCGCTTCCAAGCTTCCTGGATTTCCCTCACCGCCAACAGGCAAACCCAACAGaacagtgttatttatttaaagagagCCAGTCTGGGAACCGCACTTTTGCTTTTATTAGAAACGACCCAGAAGAACGATCCCTCGACGAATTGTGCATTGACCTATCTTATCATCAtcagtattatcattattaatattgtttatttgtaattacagCCCCTTCGTTTACTGTGGCTATAATTGTGCACATCGCTACTATAAGGCATACATGTTTACTATGTCTCTGCAAAaggttattattaatatcattagtagtagtagtagtggaaTTATCATCGTTATCAAAACAGATAGTAAGTAAGTAAGCTATCCTGAGGCTGGATGATTTTCCACAACATGCCTCACAAACCCAGCAGTAACATACCGCAAAAGGCAGGATGAATATTTCAATCAGTTATTCCTTATACCTAGATCCCTGTGTTTTACAACAACCTGCTTTCttaggctgcacttcattccttcCAACGCAGTATTCTCCAATATCTCAGTTAGTCCTTCTAATAAGGCGCACTGGGGTGATGATTAAGTGACAGCAGCTACGGACATTTATTCAGTAATGCATCCCTATACTGATAGGTCTTATTCAATATTGTTTGGTagaaagtgtaaataaataatgtacttgTTCCAGTCCAGTAGGAATGTAAATAATCTGACGGTAAAAAGGGTAGAAAAACAGCAGTGATTCCcggaacaatttatataaataccGAAATCATAACATCAATGCTGtaacaaatatattacaaaggttatcataaaaataatgcaagGTTCACAAGCAGCACATTCAGTGTCACATGcagtttcatgaaagaaaatgtccagTGCATTCAATTGTAATATTGAATTTAAGCAGTCAGTTGTTCAACACTTCTTTTAGCATCTACAGAATTGATACCAACTCACAAATATCTATTAACCtgctgtgttaaataaaattattcttGAGCTGTAatccaaaatgaattaaaagtcATTCTACTGCAGTTCTCTTTTACATATGGTCGGTAtttgtccatttctgatttacattCAGCATAAAATCCTGAAACAGCAAAGGAAGGCTTCCAGATCCAAGCTGCACACTTGTGGGTCGGGTATCCTTATTGCCTTCAGACGGTAATGAAATGGTTGAATAAAACATGACTGTTTTTGCATTGATCTCAGTTTTTCAGAAACTTCATGGGAggtttttacagtttgtttacACAGGCTCTGTGTTGTGTATGTTATGATGTGGTTCATAATTGTGAATTATATTACTATAACTAGAGTGGTTGCAGGGAAATCTAGGTTCAGTTCAATTACAATTGAAAAAGAACAAGTAACataaaatgcagggccctaCTTATATCCAATTCAGTTTGATTCTGTTGTCATTTGCGTTATgaatttctaaaatgtaaataagcaCAATCAAATTCTGGCTCCGCACTCCTTGATGAAGCAGACAACTcttcagcagcacaggcagTTTTTTGGCAACAAAGCATCACTCCAATATGTCCATCTTTGACGTCTGTCCGCCTGCCGGCATAAATCTGAACATCTACTGGCACCACAATCAATATGCCCCTGATCATTAAATACAGACGTTAGCACATTTGAAAATGGACTTGAAGGAGATTCAAGTACGAACCAGTGTACAACTGGGATGATTATAATAATGGTAATTTTAAAGATCATGGTAATGGTTATGGTAATGGTAACAAGAAAAATTCCAGCTACAGAGATACAGAAACTAGTGCACGGCTTGCTTGTGGTCAGAGGGTGGAGCCGGATGGATGTCAAATGACTCTGCCTCTCTCAGGATTTGGGCTCTTGGGGCATAATTTTGACAGTCAAAGACACCCCTGAGGGCTTTTAAACAGACTAAACGGAAATTCTAAGCCACCATTATGAATATAAATCCATGTGCCGACATTTGTATTTGACTGTCACCTACAATGTGTTTTCATACAGTTGTACGGTtaggttttcctttaatttggtTAACTGGGCCACCCAAGGGACCTGTACAAAACTGCCACTTGTCCTTAAAGGGATACTTAGGCATTTTGGTATTTTAACCCGATTACTTACTCACTGATGAATAAGAATCCATcgaaaccttttttaattcttttaattttaagaaatttgaatttataatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119422 lncRNA downstream 61052 2874107 ~ 2875242 (-) False AMCG00015140
TU119306 lncRNA downstream 193692 2742318 ~ 2742602 (-) True G95675
TU119283 lncRNA downstream 238471 2697252 ~ 2697823 (-) True G95653
TU119259 lncRNA downstream 259165 2676924 ~ 2677129 (-) True G95637
TU119258 lncRNA downstream 259615 2676439 ~ 2676679 (-) True G95636
TU119434 lncRNA upstream 3992 2943087 ~ 2945852 (-) True G95778
TU119442 lncRNA upstream 21240 2960335 ~ 2963345 (-) True G95786
TU119456 lncRNA upstream 54579 2993674 ~ 2994155 (-) True G95798
TU119476 lncRNA upstream 186336 3125431 ~ 3127592 (-) True G95814
TU119642 lncRNA upstream 533112 3472207 ~ 3472926 (-) True G95933
AMCG00015136 mRNA downstream 8017 2925485 ~ 2928277 (-) True AMCG00015136
AMCG00015139 mRNA downstream 13782 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015138 mRNA downstream 25880 2905065 ~ 2910414 (-) True AMCG00015138
AMCG00015137 mRNA downstream 32662 2893323 ~ 2903632 (-) True AMCG00015137
AMCG00015135 mRNA downstream 44667 2887584 ~ 2891627 (-) True AMCG00015135
AMCG00015144 mRNA upstream 61721 3000816 ~ 3008611 (-) True AMCG00015144
AMCG00015154 mRNA upstream 296410 3235505 ~ 3239525 (-) True AMCG00015154
AMCG00015153 mRNA upstream 303015 3242110 ~ 3247588 (-) True AMCG00015153
AMCG00015152 mRNA upstream 311886 3250981 ~ 3268761 (-) True AMCG00015152
AMCG00015158 mRNA upstream 364662 3303757 ~ 3313326 (-) True AMCG00015158
TU119414 other downstream 44598 2888250 ~ 2891696 (-) False AMCG00015135
TU119334 other downstream 120227 2813647 ~ 2816067 (-) True G95700
TU119249 other downstream 266050 2666225 ~ 2670244 (-) False AMCG00015117
TU119135 other downstream 585244 2350660 ~ 2351050 (-) True G95536
TU119057 other downstream 798842 2136420 ~ 2137452 (-) True G95472
TU119447 other upstream 39102 2978197 ~ 2980408 (-) True G95791
TU119524 other upstream 247074 3186169 ~ 3189093 (-) True G95850
TU119528 other upstream 257326 3196421 ~ 3197189 (-) True G95854
TU119619 other upstream 410784 3349879 ~ 3350442 (-) True G95921
TU119671 other upstream 665508 3604603 ~ 3607192 (-) False AMCG00015164

Expression Profile