RNA id: TU119442


Basic Information

Item Value
RNA id TU119442
length 3011
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G95786
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2960335 ~ 2963345 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccaccccacataatgcaataaaaacacaattctgaAAAACACGCTTAGCCTCAGTACAAATGTACACCTGGAGGAAAACGCATCATCCCCACCCGCAAACCAttgcaacacaaaaataatagaaTCGCCAATCCCATTCACCaactgcccccctccccctcataatttttttttgtttctgcagcTTTGTCTTACTTTGGCCCGGCGGCACAAGTACATCAGGGAGCAAGGAGCTGTACCAGATATAGAAACCGGAACAAAGTACAGTAGAGTCAGGTAGTGCTGTCTGTTCCCTTTGTGCTTGGGGTTGTGTCTCCATTGTATtggtcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaccatGGCTGAAACTAAATAACAATCATGATAATATAGTAATCATGTTAATTAAatcagcagggtctccagcccagGTCTTGAAGGGTGAGAGTTCAGTCAAGAATCACAATATCAGGATCAGTCCCTGACAGGCTGCACTAGAACAGGAATTCTCCATTAACCATGTACTGTGAGGAAGTGCTGGCATCTGTGTACAGGGGCTGGGCCTGGGGGTCCTGTGGGGCCTGGGAAGGGTGAGCATGGGAGTGGGTCTCTGTAACCTCGTGGGGGAGGGCAGAATGGACAGTCTGGtgctgctgcagcagctggaaGGAGGCAAAGGCCTTCTCGCAGTCTGGACACTCATACACCACCTCCCCCACGTGCGTCTCCTGGTGGCGCCGCAGCTGTGACACCTGGGTAAAGGACATCCAACACATGTCACACTGGAGCTCCCCACCCTCCCCTGCATCCCCGCTCCCCTGGCTGGGGCTCCACTGTGGCGTGGCAGCGGGGGGGCGACACTGGCGCTGGTGCTTCAGGAAGCCCCGCATGTTAGTGAAGCTCTGGGGGCAGCGGGGGCACTGTAGCCGGTGCTGGGAGTGGGCAGGGGCCTCGGAGGTCGCGGTGAGCCCAGCAGCACTCAGCCGGCCAGGACAGTGGTGTTCCTGCAGTTTGCGTGGGTTGGGAAAGCGGTTCCCGCACAGCTGGCACTCGAAGGGGCTCTCGCCAACATGGTAGCGCTGGTGGCGGCGCAGCTTTGCCGGGTCTGAGAAGAGCTTCCCGCACACCTGGCAGTCCAGGGTGGAGCCGGCCTGGGAGCGGGGAGAGGAGGAGTGGGCCGGAGAGCGGGAGGGGGAGCGGGACAgggtggaggtggaggaggaggaggagggggggggggagtgtggGTTGTCCACGTGGGCAGGGCCACTGACTGGGCTTTCCTGGCTCTGCTGGCGCCGGGCACACAGATGGCGGCGGAAGGCCTGGATGCCGGGAAAGGAGCAGGCGCACTCAGTGCACTCGTACTGCGCCTCGCCCACGTGGCCCCGCTGGTGCACCGTAAGGTTACTCTTGCGCACAAAGTGCTTGCCGCAGGTGTGGCACTGGTAGGGCTTTGTCTGCAGGTGCTCCCGTAGGTGCTCAGCCAGATGAGGACCGTCTGCAAAGGAGAGGGCACAGTGGGGGCACTGGAACCCACTCTGGCCTTCTGTCCCAACCCCCTTTGCACCTGCACCAGCACTGGATGTCACCTTGGGCCCAACCCCATCATCCCTGGCATGGCGCTTCATGTGGTTGGTGAAGTGGTGCAGGTACGAGAAGGCCATGTGGCAGCGAGAGCACTGGTAGGAGTGGACGGGGGTACACAGCCGGTGGGAAAGCTGGTGCTTCTGGAGGTGGGCATGGGTTAGAAAGTGCAGGGGGCAGTGTGGGCAGGGATGGGGCCGTTCAGGGCAGGGCAGGCAGCCATGCTCGGATAGCTGGGCGATGTCGGCAAACCGCAGGCGGCACACAGTGCATGGGTACTGCAGGTCCTGGCCGCTCGTAGGGTAGGAGACAGAatgcgaggaggaggaggaggaggtggaggggggtgAGGGGGGCAGTAGGGGTGGCGGTGGGGGCAGGGGCATTGGCAAGCCACCCAGTGGCTGGATGTGGCCCTTGCGGTGCAGCGCCCGGCTCAGTTTCGAGGAGAAGGTGAGGTCACAGAGGTCACAGGGGAAGTTGTCTCCCCGGTGGGCAGTGGCCAGGTGCTCGGCCAATCGGTAAGGCCGCCTGAAGCACAGGGAACACTTAGGGCAGCGGTTGGGCCGGCCCTTGCCATGGGTGCGGCGGTGTTTGCGCAGGGCGAAGAGCGACACAAAGCCACGGCCACAGGGCAGGCACTGGAACTCGGAGCGGTGGCTGCGCTCATGCTGCTGCAGATGGGCCAGCTGGAAGAAGCAGCGGCCGCACTCCGCACACTCGTGGGGCTTCTCGCCCAGGTGGCAGCGCTGGTGGTCCTCCAGGCTCTCTGAGGTGGGGAAGGTCTTGCCGCACACGTGACACGGGAAGTAGGGCGCCGAGTCCGAGTCCtcgccctcctcctcttcctcctcttcctcttcctcaaaGTAGCCATCTCGATTGTCATCATTTTCCTCCCCTCGCTGGTCATCGTCCTCGATCTCCACTTCTACATCAACGTCCTCCACGTCCACTTCCTCATCCTCGTCGTCCTCCTCCTGCGTCCTCTGCCtgctccctgcctccctctctctctccctttgctCCTCCACCGAACCAGTTGTAGTGTGCTTCTGTTTCATGTGCCGCTGGTATGTCTTCTTGCTCTGATAGACATTGCTACACAGCTGGCACCTGAACGGCTCTTGGCTCCCATTGTCCTTGTGAACCCCACCACCCTTGCCTTGGTGATTGATCCGGCAGTGTGCAGACAGTGAGCTGGAGCTGTTGAAGCGGTAGGCGCAAACTGGGCAGACGTGGGGCCGGGTTAGGTCATGCAGGACCCGGTGGCGCTCCAGCTCTGAGGAGTAGCGGAAGGTGCGGGGGCAGTGAGGGCAGGTGTAGGGCACCCTCGCACCGTGGAGCCGGCGGTGCCGCTGTAGGGCCTCAGCTTGGCTGAAGCTCTTGCCGCAGTGGTCACAATGGTGGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119434 lncRNA downstream 14483 2943087 ~ 2945852 (-) True G95778
TU119436 lncRNA downstream 21240 2936294 ~ 2939095 (-) True G95780
TU119422 lncRNA downstream 85093 2874107 ~ 2875242 (-) False AMCG00015140
TU119306 lncRNA downstream 217733 2742318 ~ 2742602 (-) True G95675
TU119283 lncRNA downstream 262512 2697252 ~ 2697823 (-) True G95653
TU119456 lncRNA upstream 30329 2993674 ~ 2994155 (-) True G95798
TU119476 lncRNA upstream 162086 3125431 ~ 3127592 (-) True G95814
TU119642 lncRNA upstream 508862 3472207 ~ 3472926 (-) True G95933
TU119672 lncRNA upstream 639259 3602604 ~ 3603677 (-) True G95960
TU119668 lncRNA upstream 654428 3617773 ~ 3618298 (-) True G95957
AMCG00015136 mRNA downstream 32058 2925485 ~ 2928277 (-) True AMCG00015136
AMCG00015139 mRNA downstream 37823 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015138 mRNA downstream 49921 2905065 ~ 2910414 (-) True AMCG00015138
AMCG00015137 mRNA downstream 56703 2893323 ~ 2903632 (-) True AMCG00015137
AMCG00015135 mRNA downstream 68708 2887584 ~ 2891627 (-) True AMCG00015135
AMCG00015144 mRNA upstream 37471 3000816 ~ 3008611 (-) True AMCG00015144
AMCG00015154 mRNA upstream 272160 3235505 ~ 3239525 (-) True AMCG00015154
AMCG00015153 mRNA upstream 278765 3242110 ~ 3247588 (-) True AMCG00015153
AMCG00015152 mRNA upstream 287636 3250981 ~ 3268761 (-) True AMCG00015152
AMCG00015158 mRNA upstream 340412 3303757 ~ 3313326 (-) True AMCG00015158
TU119414 other downstream 68639 2888250 ~ 2891696 (-) False AMCG00015135
TU119334 other downstream 144268 2813647 ~ 2816067 (-) True G95700
TU119249 other downstream 290091 2666225 ~ 2670244 (-) False AMCG00015117
TU119135 other downstream 609285 2350660 ~ 2351050 (-) True G95536
TU119057 other downstream 822883 2136420 ~ 2137452 (-) True G95472
TU119447 other upstream 14852 2978197 ~ 2980408 (-) True G95791
TU119524 other upstream 222824 3186169 ~ 3189093 (-) True G95850
TU119528 other upstream 233076 3196421 ~ 3197189 (-) True G95854
TU119619 other upstream 386534 3349879 ~ 3350442 (-) True G95921
TU119671 other upstream 641258 3604603 ~ 3607192 (-) False AMCG00015164

Expression Profile