RNA id: TU119447


Basic Information

Item Value
RNA id TU119447
length 2150
RNA type TUCP
GC content 0.48
exon number 2
gene id G95791
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2978197 ~ 2980408 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAAATGTATACAGAGGATATTTCATGGCAAAAATTaaccagctgaaataaaaatagaaataaaggtGCAATTAAAGGAATCTCAGGACATTTATTGACCACATGGTAGGTGACTAGACTCCAAACCAGTCCCActctcaaataaaaaaacaaaaactgaaactgaaaagctATCAAATAAAGGGAGCATCAATTactaaatgacaataaaaaccCAACTATAAATGTATCTCCCAGTCCAGCATGGTCTCCAGCCCTGTTTCTGGAGAGAGATAGTACACACAGAAGGATAGCAATACACctacaaataaatgcagtaGGCACACACACTCCAAATGCCAAATGTAATTGTAGATTTTTtaagtggagagagagacagacagacaagcagaGGGAAGGAGAACTTCCACTGAAATGACCAGTAATACTTGCTTCACTGTAATGATGTTGCAGTTAGTAACTCAGCACTCAATATTGTAATGCCTCTCTCACCACAACGATAGgctatatataaatgaatacatttataaaagggACACAGGAATAAATCATACAGATACTACATTTAATTTCTCCACACTCACATTCTGAGTTTAAAACACCcaaactttaatttcagaggCCCGGCCCAGCAGAAACACTCCATCCCCAGGTCCTGTCCTCTCGTGGCTCTGCCTCCCTGGGCAGCTGCTACCTTGTGTAACGGAGCAGTCCAGTGACAGAAGCCAAGTATAANNNNNNNNNNtttttatatatatatatatatatatatatatatagttttgaaaaCACTGCAGCTGGTGCAGACAAAGGAGTGTCGGTGTAGGCCATAAATTGCCTCCTCCTTCTGTGTTGATACAGTGCATCTCCTTCTGTTTTGTAGCTTtgagggggggttggggggggtgtcCGCCACCGTTGATCAAAACAGTTCTTCTCCAATAAGAAATTAAGGTCCAGTTGGAAAAATTCTCTCGACCCCAAGTGAGAATCTGCCCCTCTCCATGCCCTCCTTGGCCCCCATTGGGATAATCTCACACCCAGCTATCTTCCACCTCTGTCAGAGAATCCACCCACTCACTCCAGTGGTTGCTGAAATCGGTGCAGTTCATAGTGGGGAACTTCTgttacccccacccccaactctCTGCCTGGAAAAATGTACAGTTGCACCACTTTACAGACTAGATGACACTATGACCTCCAAAAAACAGTTTAGTCAAAATGAGAAACATCTTTTACAATCCTTCTTAATCCATCTTTGCCATCAAGTTCactggtgttgtgtgtgtgtgtgtgtgtgtgtgtcagtgtgactgACTGTGTGTACATGTCAGTGTCCAGTGTGCATCTCCTGCTCCACCCCCTTGCTTTCGCTCAGTCCCTCACtcccacacactctcacactgctCCTATTTAAGCTCCAGCTTTGGGGATATCTGGCAGCCTCTGTGGCATTCTGTCTCCCCCTCCCTAGTCTCCTTTCTCTTCACCTCCCACGCTTTGTCTctctacctcCAACCATCTGGCCTCCCCACTCACCCCTACCCTCTGCTCCTCCCTCTGGCACTCCTCAGCAGCTTTGGCTCTAGCGATGCAACCCCTCTTATAGGTCCTCAGTTTGCGAGGCTCCTGGGCACCACAACCATCTTCCCCAGCAGaggggtgatgggggggcaccAACTTGCCTCCAGCCGCACTCTCCCCCTGTCCTCCTCGCTGGTGGCTCATCCTACTCACACATGGTGGGCTGCCCAAGCTGGATCTGCCTTCTCTGACATGCTCAGTCTCCATTTCAACCtcttctcttcccctctcttcctcctgctccctgGCCCCTCCTTCTTTTTCTACTTCACTGCCTCCCCATGCCCCGTCTCTCCTTCCTCCCCACTCTACTCCCacctcttctcttttttcctctaCTGCCCACTCCTCCTCTTCACTCCATCCCCATCGCCCATCTCCCTTCTTCACCCTTGCTTCCTCCTCTCCATCCCTTGCATCATGTCCCCCTCCCTTCCACATCACTGCTCCCTCTATGCCtccctcctcctgcctctccaccTTCACTATGCCCTCCATGCCtccctcctcctgcctctctaTCTTCACTgccctctccatccctccctgcTCCTGCCTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119442 lncRNA downstream 14852 2960335 ~ 2963345 (-) True G95786
TU119434 lncRNA downstream 32345 2943087 ~ 2945852 (-) True G95778
TU119436 lncRNA downstream 39102 2936294 ~ 2939095 (-) True G95780
TU119422 lncRNA downstream 102955 2874107 ~ 2875242 (-) False AMCG00015140
TU119306 lncRNA downstream 235595 2742318 ~ 2742602 (-) True G95675
TU119456 lncRNA upstream 13266 2993674 ~ 2994155 (-) True G95798
TU119476 lncRNA upstream 145023 3125431 ~ 3127592 (-) True G95814
TU119642 lncRNA upstream 491799 3472207 ~ 3472926 (-) True G95933
TU119672 lncRNA upstream 622196 3602604 ~ 3603677 (-) True G95960
TU119668 lncRNA upstream 637365 3617773 ~ 3618298 (-) True G95957
AMCG00015136 mRNA downstream 49920 2925485 ~ 2928277 (-) True AMCG00015136
AMCG00015139 mRNA downstream 55685 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015138 mRNA downstream 67783 2905065 ~ 2910414 (-) True AMCG00015138
AMCG00015137 mRNA downstream 74565 2893323 ~ 2903632 (-) True AMCG00015137
AMCG00015135 mRNA downstream 86570 2887584 ~ 2891627 (-) True AMCG00015135
AMCG00015144 mRNA upstream 20408 3000816 ~ 3008611 (-) True AMCG00015144
AMCG00015154 mRNA upstream 255097 3235505 ~ 3239525 (-) True AMCG00015154
AMCG00015153 mRNA upstream 261702 3242110 ~ 3247588 (-) True AMCG00015153
AMCG00015152 mRNA upstream 270573 3250981 ~ 3268761 (-) True AMCG00015152
AMCG00015158 mRNA upstream 323349 3303757 ~ 3313326 (-) True AMCG00015158
TU119414 other downstream 86501 2888250 ~ 2891696 (-) False AMCG00015135
TU119334 other downstream 162130 2813647 ~ 2816067 (-) True G95700
TU119249 other downstream 307953 2666225 ~ 2670244 (-) False AMCG00015117
TU119135 other downstream 627147 2350660 ~ 2351050 (-) True G95536
TU119057 other downstream 840745 2136420 ~ 2137452 (-) True G95472
TU119524 other upstream 205761 3186169 ~ 3189093 (-) True G95850
TU119528 other upstream 216013 3196421 ~ 3197189 (-) True G95854
TU119619 other upstream 369471 3349879 ~ 3350442 (-) True G95921
TU119671 other upstream 624195 3604603 ~ 3607192 (-) False AMCG00015164
TU119841 other upstream 1194471 4174879 ~ 4180441 (-) True G96094

Expression Profile