RNA id: TU119524


Basic Information

Item Value
RNA id TU119524
length 2868
RNA type TUCP
GC content 0.44
exon number 2
gene id G95850
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3186169 ~ 3189093 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTACAACTCGATGCTCCATAACATGCTTTATTGATTATTGAcgtttttttaaaaaaaaaatcatgcacgcacgcacacacacacacacacacacacgccaacGCAGACAAACGCACATAGGCGCTGCACTACACGCtaaaggcagacagacagagagacgcacacagacccTCACCTCTTTCGTGTTCACGGTACCTTTGACGTACTTCGACCGAACCGGGTCGGCGCAAAGAATATACGACAGCACCACCAGCCAGAACCGCTCCTGGGCCCGCTTCAGCCCGGCCAGGTCCATTCTCCGCTCCCCCTCTCGTTACTTATCCCTGTCGTTTCTGGCAATAATTGTCTTCCCTTCTTCTCTCCCAAGAGTTCAGAATGCAAAGTGTCGGGAGCGAGGATGCTTCACCGAGAGAGGAAATGCGCGCGCCCGCCTCTCCCCACTCTGTATTCTGTTACACATGCGCGCCCCCGCGACGATCCGCATGCCCGCCGCCCCTTCTACCCGTGCTCGGCGCGTCCCCGTGTTCCGGATTGCGACACACGGACACAGCGACCTCAATTCCCCgtattaattatatacacagacacacacacacatacacacaatctctcacacacactttctttaTGTGGAATAGCAGGTTGAACAACACACAGATGTATTaatatcattttcatatttattcctttaaaaatcaaaaaccaGGCGGTTTCACTTCAGAGAgttatctatatataaattcatacatatatatatatatatatatatataaatttcatagatAAACACCAAGACCATTGTAGTTTtatgcaaaacaacaaccaatgaaaatagcaataataacaatatttataattatgaatGATAGTAAAAATATTCTCTACAGAATGAGTTAAGGAGTGGTTGGTTGCACTttaggcttaaaaaaaaatcaattttttaaatgtgcttgtttTACATGTCctgggaggaggagaagaaactgaaaaacgGGGACCAAagaagaaggaaggaaaaaaatagaataaatactaAAAAATCAAATAGAGAGAATAAGGGTCCAGTGCTAATTTAGTAATTAAAAACTTGGCCAATTATGCAATTAATGGTCAAATACACAATTAAGTGGCTGCAGTAGAGGCTCATGGGATAATGTGCTTTGAGGTCAGCactcaacacagcacagcacaaaatGACAACACAGCACACGCTCACACATGTGCCAGGGATGGAGAcggtggggggggagagagcaAAAAGTAAGATACACAGATAGTGAGACAGGGACAGACTGGCAGAGTgacaggaagacagagagaggagagaagagagtaTGATAAAAAGACAGATAAACAGatagacaaacacagacagacagtgccCTCCCAGAGTCACAGTGCGTCTGTAAGCTCCAATCAATAAGGTTAATTTTGTTGTAAACATCATAGTGTGgagaacacacagacacacagcttcATTACAGTCATTACAGTTacagtacaaacaattaaataaaatctgatgTTATTACACATAATCTGCAGTTAGTGATGTTACTCTGTACACCATAAAATCAtgtaataacataataattacaCAGTCTGCTGTAGAGTGTTAATAGATGTGTAATTACACTGACTAATGATGCAGCACCTGGTAATATCAGTAATGTGAGAATAGAAACACTACCCCATGTAGCTATGGTTAATAATTGCACTGATtagtaaagtaaattaaacagtctaataacaataatgcagCTCCAGATAATACAAGTTAATTAATAACAGTAACTTAAGTTAATAGTCTAATTATCGTGATGTAACTACATGTTTATAAGAATGTAATTATActgttatatattgttttatatatatatggttataCACAATATAATGGTTTAAGTATAAATCATATAGTTAAACTAATTAAACTATAGTTCATAGCTGTTTAATAGCAATTGGCTGCAGTGATTAGTACAGTGTAAGAGAAAGGCAATGAGGCTCaattagtgtgagtgtgtatatatgtcagcatgtttgtgagtgtgtgtattagtCTTAGTGagtgttgtgtatttgtgtcaGTGCTGGTGAGAGCTCTCTGGTCACTTTAAAGCAGTAGCTTATTACAGTATTGCAGCTCCCACCTCCTCAACAAACCCCTCCATTAACAGGTAGAAGGCAAAATTGTGCGATATAATCAAGTCCCCCCTACACTCTCAACAACACTTCCTATCACTCTTTTGCTCTATCTCTCTGGCTCCCTCTCTTCTGTCCTCACTTCCTCCCAGCCTCTCTTCTCTGCCCCTCTTTCTCGTTCCCCTCTGCCATTTCAGTCTCTCCCCTCTCCATTACgcattctctcactctctctataCCCTCTTACCCACTCTCTATgggccccctctctctccacctaCAACCTCTCTCATGGTCTTGTTTTCCCCCTCTCTATTggctcctctttctctctcccactctctctctctctcaggctccTATCTCTCTGCTGGCTGCATTGCTGTGAGACTCCACTCCTTCCTCTGGCTCCGCCCCACTATTGGTCCTATCTCCCCTGATGTCCCCGCCCTGGGCCCCTCCCCCAGAATCTGGGAGATTGGCCTGCGTCCTCTCCAGCTTCCTGTGCTTGCGGATAGGGGGCAGGACCTTCTGGTTGAAGATGTCCCTGATTCGATCCACGCAGATATTGGCCGCCTCCCGGGTCTCCCTGGAGAGCTGCGATAGGCTGAGGAAGCCGTGAGGGAGGTCCTCCACCACGCAGAGGCTCACCGGTTGGTCGACGGCACGCAGCCTCTTGGCGAACATCACTGAGTCATCGAGCATGGGGTCCAGAGCAcaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119476 lncRNA downstream 58577 3125431 ~ 3127592 (-) True G95814
TU119456 lncRNA downstream 192014 2993674 ~ 2994155 (-) True G95798
TU119442 lncRNA downstream 222824 2960335 ~ 2963345 (-) True G95786
TU119434 lncRNA downstream 240317 2943087 ~ 2945852 (-) True G95778
TU119436 lncRNA downstream 247074 2936294 ~ 2939095 (-) True G95780
TU119642 lncRNA upstream 283114 3472207 ~ 3472926 (-) True G95933
TU119672 lncRNA upstream 413511 3602604 ~ 3603677 (-) True G95960
TU119668 lncRNA upstream 428680 3617773 ~ 3618298 (-) True G95957
TU119680 lncRNA upstream 540906 3729999 ~ 3730319 (-) True G95968
TU119690 lncRNA upstream 681983 3871076 ~ 3871334 (-) True G95978
AMCG00015144 mRNA downstream 177558 3000816 ~ 3008611 (-) True AMCG00015144
AMCG00015136 mRNA downstream 257892 2925485 ~ 2928277 (-) True AMCG00015136
AMCG00015139 mRNA downstream 263657 2915988 ~ 2922512 (-) True AMCG00015139
AMCG00015138 mRNA downstream 275755 2905065 ~ 2910414 (-) True AMCG00015138
AMCG00015137 mRNA downstream 282537 2893323 ~ 2903632 (-) True AMCG00015137
AMCG00015154 mRNA upstream 46412 3235505 ~ 3239525 (-) True AMCG00015154
AMCG00015153 mRNA upstream 53017 3242110 ~ 3247588 (-) True AMCG00015153
AMCG00015152 mRNA upstream 61888 3250981 ~ 3268761 (-) True AMCG00015152
AMCG00015158 mRNA upstream 114664 3303757 ~ 3313326 (-) True AMCG00015158
AMCG00015157 mRNA upstream 155281 3344374 ~ 3347587 (-) True AMCG00015157
TU119447 other downstream 205761 2978197 ~ 2980408 (-) True G95791
TU119414 other downstream 294473 2888250 ~ 2891696 (-) False AMCG00015135
TU119334 other downstream 370102 2813647 ~ 2816067 (-) True G95700
TU119249 other downstream 515925 2666225 ~ 2670244 (-) False AMCG00015117
TU119135 other downstream 835119 2350660 ~ 2351050 (-) True G95536
TU119528 other upstream 7328 3196421 ~ 3197189 (-) True G95854
TU119619 other upstream 160786 3349879 ~ 3350442 (-) True G95921
TU119671 other upstream 415510 3604603 ~ 3607192 (-) False AMCG00015164
TU119841 other upstream 985786 4174879 ~ 4180441 (-) True G96094
TU119954 other upstream 1428618 4617711 ~ 4619264 (-) True G96191

Expression Profile