RNA id: TU119559



Basic Information


Item Value
RNA id TU119559
length 344
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G95878
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3311918 ~ 3325570 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGCTGAAGGAGCAGGGCAGAGAAACTGACCCCCCACCCAGCACGTCCACCTCCTGCGGGACCATCACTGTCACTGTGGCTGCtacccCTTCCAGGGAGAAAATCAGCAAAACGGTCAGCAGGAAAGTGCGTCTTAGACTCTTGATAGCGTCCATCTCCGAGCGACTTCTCTCTCTGTtgcaatctttcttttttgaatCGCTcacttgcttgcttgctttctcTTCcactccctctttctcttgatctctccttctccccctctctcctcactgGCTCTATAGCAGTTCTGACTGTTGCGTCTCCCGCTTAATATACAAGTACAAAAGGTAACCCCCCCCCACG

Function


GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU119555 lncRNA upstream 7596 3302675 ~ 3304322 (+) True G95874
TU119513 lncRNA upstream 61394 3250316 ~ 3250524 (+) True G95839
TU119500 lncRNA upstream 67586 3242188 ~ 3244332 (+) True G95828
TU119402 lncRNA upstream 317747 2993674 ~ 2994171 (+) True G95753
TU119389 lncRNA upstream 369017 2942657 ~ 2942901 (+) True G95742
TU119567 lncRNA downstream 18806 3344376 ~ 3347075 (+) False G95882
TU119568 lncRNA downstream 18806 3344376 ~ 3347075 (+) True G95882
TU119573 lncRNA downstream 25958 3351528 ~ 3408784 (+) True G95885
TU119579 lncRNA downstream 68372 3393942 ~ 3395414 (+) True G95890
TU119581 lncRNA downstream 73500 3399070 ~ 3437323 (+) True G95892
AMCG00015155 mRNA upstream 16203 3284282 ~ 3295715 (+) True AMCG00015155
AMCG00015150 mRNA upstream 110815 3189566 ~ 3201103 (+) True AMCG00015150
AMCG00015151 mRNA upstream 125378 3184731 ~ 3186540 (+) True AMCG00015151
AMCG00015149 mRNA upstream 128727 3173919 ~ 3183191 (+) True AMCG00015149
AMCG00015148 mRNA upstream 138462 3170182 ~ 3173456 (+) True AMCG00015148
AMCG00015162 mRNA downstream 228674 3554244 ~ 3555842 (+) True AMCG00015162
AMCG00015166 mRNA downstream 313792 3639362 ~ 3663412 (+) True AMCG00015166
AMCG00015165 mRNA downstream 401343 3726913 ~ 3731964 (+) True AMCG00015165
AMCG00015167 mRNA downstream 428494 3754064 ~ 3756872 (+) True AMCG00015167
AMCG00015168 mRNA downstream 468896 3794466 ~ 3822463 (+) True AMCG00015168
TU119395 other upstream 344591 2965301 ~ 2967327 (+) False AMCG00015142
TU119344 other upstream 488158 2820467 ~ 2823760 (+) False G95704
TU119325 other upstream 503423 2806811 ~ 2808495 (+) True G95693
TU119243 other upstream 645792 2664504 ~ 2666126 (+) True G95624
TU119235 other upstream 653167 2657485 ~ 2658751 (+) True G95618
TU119665 other downstream 316370 3641940 ~ 3642200 (+) True G95955
TU119711 other downstream 644259 3969829 ~ 3971683 (+) False G95992
TU119757 other downstream 763631 4089201 ~ 4100140 (+) True G96030
TU120035 other downstream 1550551 4876121 ~ 4879896 (+) True G96264
TU120099 other downstream 1695796 5021366 ~ 5022052 (+) True G96317

Expression Profile