RNA id: TU119567


Basic Information

Item Value
RNA id TU119567
length 2113
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G95882
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3344376 ~ 3347075 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACCAAAAAAAGACTTTATTAATTGTACAATGTTAATGTTTCTTGCTTGCAGCTGCCACCTGGAAAGAGAGAACAGAGGAGTCAGAGCCAGTATGTAGCAGCATGCAGCTGCAGCGTCAAGAGCGACTGTCTGCTCTAGGGTTGGTGTCTCAGTCACTGCTCATTACACTGCTTTATCAGGGCTATCTGATCAGCTGCTGGGTGAGCAGGTGTGAAAGAGAGGGCAAGAGTGGGGGGCTTATAGAGCAGTGGGAGGACAGACacgcacagggacacagacacGGCAACCAACAGTCAGCCACTTGACAGACAAAGCTACAGTTAGACTGACAcatgcacagagaaaaaaaaaactgacacatGGACTCACCTGGCCAGCAATTCTGTCCAAGTCCCTCTGGCCCTGAGGAGTCAGTCTGCggcccctgagagagagagagagagagagagagtgagagtgtgttaATATACAAACACTCACTGGACACTAACTGCCCACTGACAGACTGGGAGAGACCCTGCTTCCTCGCCCTGCCCTTCCATCCACCCCAGCCTCGCTCACCCATTGGGGTCTTTCTCCACCATCTTGAGCCCCTCCAGCCCCTGCAGCACCCTGCGCGCCACGTTCTTGGAGCCCTTGCTGAAGTGAGAAGGACACACGCCATTGCGCTGACGCCCCCCGTAGATCTTGGTCATGGAGCCCACGCCTGCACCGCCCCGGAGGTACAGGTGACGCGCCGTTGAggGGCTCTGGTGTAGAACCAGTTCTCATCACAGGGTGCCAGCTCCTTGTGCTTGGCCAGCTTGACTGTGTCCACCCAATCAGGCACCTTCAGCTTGCCCGACCTGGGAGGGGGAGAGCGCACATTTCATCCATAAGTGAAAGACGGGACAGAGAACTAGAGCTGGGGAGTTTCTTACAGAGAGACCGAGAAAAATAGTAGTTTATCTTACTTCTTGAGGAAGGCAGACAGTGCCCGGACAAATTCCTGCTGATTCACGTCTTTTACTGTGACACCAGGCATCTGACAGGAGGAGAAAGATAAGGCATTAGTTACAATTGATGCATTGTCCTGTACCACTGCTGCTTCACTGTACAGAAAGTAAAAAACAGCAGAGAAACATGATTTTAGCAGTCTAGCCGTCCTTAAGGTTTACATCATTTATCTATAACCCTATAGTTGTCAACCAGgacaaaaaactgaaacaaattaattttgaaatgacGCTTTTACCCGTATAGAAGTCGCCTGCTAAATGTGCAGATAATCAATCCTGTTGACTACGCGCTATCGCCGCGCTGCTGCAGAACAATGTGCGGTAACCGGACTGTAAACTAGCATTCATTTGCAGATTGTTACATATCCACACTACAattatgacattaaaaaaaaataaggtacTGATTTGTATATCATCCCCGTGATTGTAAATCAGGCGCAGTAGGTGAAAACGTACCAATTACCATTACATTAGGTGCATCTGCCGCCTCTTACACAGGGCGATTCAACACTGGTCATACAATACACAATTTTCGACAAACTAAAATCGACCAAAATAGAGTTCATTCCTCTATAAAAGGCCCATCTTAAATAAAACCCAAGCACAAAATACGGTGCATTATATAATCGATCAAGTGTACGCAGATACGATCATGGTTTAACTGGATAAAGATCGTTTTCCCTAAAATTTCCCTACatcaatatttagaaaatacaatcaGATCACCCTTAGCctttagttattaatagacagCAGTCTAAGGCAGTGTATAGACTTGTGTGGGGACACATGTTCGAGTTAGCATATATGATGGCAACCAACGATACCAGCACGCATTTGTCCCTACACAAGACCATTACAGCACCCTACACTGGGCTACGGACAAATTAAGCAGGACATCAAGACGACACTGTACATTTAATAGCCGTGATCGGCTCTGCGATTGTGTACCGCTGACGGCTTGACTGCAATGCGGCCCCTGCGCCTCTTAGAAGCGTAGACCAGACCTGAACTGTCCGGGCCCCTGCATTAGAAAAGTAATTTTCAATACAATAGACGCCTGTAAACAAAGATCGGGAATGTACAAAACTCAAATAGAGGCATATGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119559 lncRNA upstream 18806 3311918 ~ 3325570 (+) True G95878
TU119555 lncRNA upstream 40054 3302675 ~ 3304322 (+) True G95874
TU119513 lncRNA upstream 93852 3250316 ~ 3250524 (+) True G95839
TU119500 lncRNA upstream 100044 3242188 ~ 3244332 (+) True G95828
TU119402 lncRNA upstream 350205 2993674 ~ 2994171 (+) True G95753
TU119573 lncRNA downstream 4453 3351528 ~ 3408784 (+) True G95885
TU119579 lncRNA downstream 46867 3393942 ~ 3395414 (+) True G95890
TU119581 lncRNA downstream 51995 3399070 ~ 3437323 (+) True G95892
TU119583 lncRNA downstream 51995 3399070 ~ 3466541 (+) False G95892
TU119595 lncRNA downstream 68661 3415736 ~ 3417381 (+) False G95903
AMCG00015155 mRNA upstream 48661 3284282 ~ 3295715 (+) True AMCG00015155
AMCG00015150 mRNA upstream 143273 3189566 ~ 3201103 (+) True AMCG00015150
AMCG00015151 mRNA upstream 157836 3184731 ~ 3186540 (+) True AMCG00015151
AMCG00015149 mRNA upstream 161185 3173919 ~ 3183191 (+) True AMCG00015149
AMCG00015148 mRNA upstream 170920 3170182 ~ 3173456 (+) True AMCG00015148
AMCG00015162 mRNA downstream 207169 3554244 ~ 3555842 (+) True AMCG00015162
AMCG00015166 mRNA downstream 292287 3639362 ~ 3663412 (+) True AMCG00015166
AMCG00015165 mRNA downstream 379838 3726913 ~ 3731964 (+) True AMCG00015165
AMCG00015167 mRNA downstream 406989 3754064 ~ 3756872 (+) True AMCG00015167
AMCG00015168 mRNA downstream 447391 3794466 ~ 3822463 (+) True AMCG00015168
TU119395 other upstream 377049 2965301 ~ 2967327 (+) False AMCG00015142
TU119344 other upstream 520616 2820467 ~ 2823760 (+) False G95704
TU119325 other upstream 535881 2806811 ~ 2808495 (+) True G95693
TU119243 other upstream 678250 2664504 ~ 2666126 (+) True G95624
TU119235 other upstream 685625 2657485 ~ 2658751 (+) True G95618
TU119665 other downstream 294865 3641940 ~ 3642200 (+) True G95955
TU119711 other downstream 622754 3969829 ~ 3971683 (+) False G95992
TU119757 other downstream 742126 4089201 ~ 4100140 (+) True G96030
TU120035 other downstream 1529046 4876121 ~ 4879896 (+) True G96264
TU120099 other downstream 1674291 5021366 ~ 5022052 (+) True G96317

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU159890 True 1063 lncRNA 0.44 3 CI01000027 5197626 ~ 5201086 (+)
grasscarp (Ctenopharyngodon idella) TU276253 True 4640 lncRNA 0.39 2 CI01000057 94117 ~ 162108 (+)
tiger barb (Puntius tetrazona) TU276253 True 1852 lncRNA 0.45 2 NW_025048264.1 16532 ~ 19599 (+)