RNA id: TU119595


Basic Information

Item Value
RNA id TU119595
length 1540
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G95903
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3415736 ~ 3422953 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aCGAGACTTcatgacaataaaaacaatactgacatatcaatagtaataataataataataataataataataataataatagtaatattttcCAGTATAAAATATTGTTCCTCGTTTTTCATTGAAAGAAATGCCTCCAagcaacacaataaacacataacaggaccagggctggagaccctgctgtaaaCTGAGTTTCAATGCATGCAAATTTCAGATTACTGTAGAAACTATTTCCAATCCACCTGTTTTGTGTTCAGTGGGCGTCCAATCAAATGGCTGTGTGCTCAGATGGGCAGCACAGCCGACCATCCAGAACACAGGCTGTGGacggagaggtggcatcaactAAGCCTAAATCCCATGTGCTGTAGTTATTGAAAATTAGCATCAGTCTGCGAAAACGGACCAATCAGAAGcaattgaaatagaaaaaaaatccaactaGCAGCAGTACAATTCAGGAGGCTCGAATCATAGGCAAAGAAAATCGAGTCACCCAATCAGAATCCTGCATCAAGTTCAACTTAGGGAGGCaaagtaacaataataacaataatattaaagactttacaaataaagcaaaatattgattttggcATACACATAACAGATGACCTTTGTCCAATCAGAATCCTTCATTTTCCAGGAAGGAATCCATGCAATCCAATTAGAATCCTTCATTTTCCAGGAAGAAATCCACAAAGTTAAATCCGAATCCTTCATTTTCCAGGAAGGAGccttcctcctttggagtgcCCCCCCCTTGTCAATCAGATGGGAGTGAGAGGAGAGGTTGAGGGGGTGGGGTTTCACAGAATTTGATTTTTTGAGAGTTgagataaattattaatatttactgtatttatgtgttgTTCCCATCGCCATGAGTTCCTGAGTGCTGGGCCTTTTTGAAAGTAGAGTTAATCAATTATATTATACGTTTGTAAGCTGTGGGTTTGGACTTCCGAATAATTAACAATCCTTGGTCTGACTGACTGGACCCAAGACAAAAGCACTGTAATTACACAGCAACTGTCTCCACCACTactcacttctctctctctctctctctctctctctctctctctctctctctcccaaccTCCTCCCCTCTCACATGGACATGGTGGTGAGGTGCTGGTGGCCCAGCAGGCCCGGTTGGGGGCCAGGATGCCGCCAGGCAGCTGGAGCAGCACAGTGGCCACACCAGCCATGCCGTCATCAGTGGGCTCCAGGGTGATGGGCCCCACCTTGAAGCAGCAGTAGGAGAAGCCCATGAGCTGCGACAGGAAGGGGTCCGAGCGGCAGAACTGATGGTAGTGGGGGCCCTGGGAGAGGGGCGGGGCAGTGGCTGTGGAggcgggggggtggtggtggtggtggtggtggtagggggggtggtggtggtggtgcgaGTGGGCATGGGCGTACTGGTGCAGGTAGTGCAGGGGCAGGGGCTGGCTGCCCAGACCTCCGCCACCCCCTGAGGGTGGCTGACTGTCCAGCTTCCCATAAGACGAGCCCCCCCCCAGCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119573 lncRNA upstream 6952 3351528 ~ 3408784 (+) True G95885
TU119579 lncRNA upstream 20322 3393942 ~ 3395414 (+) True G95890
TU119567 lncRNA upstream 68661 3344376 ~ 3347075 (+) False G95882
TU119568 lncRNA upstream 68661 3344376 ~ 3347075 (+) True G95882
TU119559 lncRNA upstream 90166 3311918 ~ 3325570 (+) True G95878
TU119641 lncRNA downstream 54914 3472295 ~ 3472720 (+) True G95932
TU119653 lncRNA downstream 120751 3538132 ~ 3538336 (+) True G95944
TU119660 lncRNA downstream 183748 3601129 ~ 3601385 (+) True G95950
TU119676 lncRNA downstream 254008 3671389 ~ 3671670 (+) True G95964
TU119684 lncRNA downstream 393184 3810565 ~ 3811060 (+) True G95972
AMCG00015155 mRNA upstream 120021 3284282 ~ 3295715 (+) True AMCG00015155
AMCG00015150 mRNA upstream 214633 3189566 ~ 3201103 (+) True AMCG00015150
AMCG00015151 mRNA upstream 229196 3184731 ~ 3186540 (+) True AMCG00015151
AMCG00015149 mRNA upstream 232545 3173919 ~ 3183191 (+) True AMCG00015149
AMCG00015148 mRNA upstream 242280 3170182 ~ 3173456 (+) True AMCG00015148
AMCG00015162 mRNA downstream 136863 3554244 ~ 3555842 (+) True AMCG00015162
AMCG00015166 mRNA downstream 221981 3639362 ~ 3663412 (+) True AMCG00015166
AMCG00015165 mRNA downstream 309532 3726913 ~ 3731964 (+) True AMCG00015165
AMCG00015167 mRNA downstream 336683 3754064 ~ 3756872 (+) True AMCG00015167
AMCG00015168 mRNA downstream 377085 3794466 ~ 3822463 (+) True AMCG00015168
TU119395 other upstream 448409 2965301 ~ 2967327 (+) False AMCG00015142
TU119344 other upstream 591976 2820467 ~ 2823760 (+) False G95704
TU119325 other upstream 607241 2806811 ~ 2808495 (+) True G95693
TU119243 other upstream 749610 2664504 ~ 2666126 (+) True G95624
TU119235 other upstream 756985 2657485 ~ 2658751 (+) True G95618
TU119665 other downstream 224559 3641940 ~ 3642200 (+) True G95955
TU119711 other downstream 552448 3969829 ~ 3971683 (+) False G95992
TU119757 other downstream 671820 4089201 ~ 4100140 (+) True G96030
TU120035 other downstream 1458740 4876121 ~ 4879896 (+) True G96264
TU120099 other downstream 1603985 5021366 ~ 5022052 (+) True G96317

Expression Profile