RNA id: TU119711



Basic Information


Item Value
RNA id TU119711
length 845
RNA type TUCP
GC content 0.46
exon number 4
gene id G95992
representative False

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3969829 ~ 3971683 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTCATATACACTGTCTGCAGCTGTATATTTAGGATAGTTGAAGTAGTAGATGCGCAAGGGAGCCACTTGGCCTCATAGGAGAACGGTCAAGtaaagcaggagagagagagagggagagacacagagacagagagagagaggtgggagcCTACTATACTACTGGGATACTACAGACTGGTCTGTGAGAATGAGAGTTGGGGTATGTCTGTTTCTGCTCGCCTCATTGGCCGTCTTCACCCAGCAAAGCCAAGgAGCCTCACAGAAAGCTGACTGGGCGAAGACTAAGGATCTCAGGCAGAAACAAATCccaggaggaggaagaaatgGGATGGGCTGTGTCTGTGCAGGCAGACATAGTTCTGTTACACCTGGGGGAATCCTGGCTCCGGACTGTAACTGCATGGCCCCCACAAAAAATACCAAGAAAAATAAGAGGAACTTCAGAAGAGTTGATCTGTTGAAGAACTGCTTCAAGAACAAGAGGATGAAAAATTGTAGGAGATCTTCTGCTCAGAGGCCCCCCCCCCATGGAGTGCCACCCAGCACCCCGCTTTAGATGGGCTGGGCCTGGATCCCCCCCAACTTCAACCCCTTCAACTCCCACCCCACCCAAATCCTGGGACAATAACCAGACAGTTAACCATTAACCAATTAAGAAACAAACCTACTAACAAACTTCACAGCACAGGCTTTAGTGTATTGGATGATACAGTGCATCAATAAACAGGTTAATCAAATGTCTGTggcattcaaatattaattattgtctGTCTAACTATCTATGTATCCATCTATTAGATAGTTGAATAAAGCATTTCCATATGTATTATGCATCTATCTACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU119699 lncRNA upstream 34794 3933916 ~ 3935035 (+) True AMCG00015173
TU119696 lncRNA upstream 53095 3903699 ~ 3916734 (+) True AMCG00015170
TU119689 lncRNA upstream 98495 3871078 ~ 3871334 (+) True G95977
TU119684 lncRNA upstream 158769 3810565 ~ 3811060 (+) True G95972
TU119676 lncRNA upstream 298159 3671389 ~ 3671670 (+) True G95964
TU119793 lncRNA downstream 262988 4234671 ~ 4283832 (+) True G96059
TU119798 lncRNA downstream 272704 4244387 ~ 4299500 (+) True G96061
TU119800 lncRNA downstream 279980 4251663 ~ 4255472 (+) True G96063
TU119795 lncRNA downstream 321376 4293059 ~ 4296312 (+) True G96060
TU119812 lncRNA downstream 328223 4299906 ~ 4300232 (+) True G96072
AMCG00015173 mRNA upstream 20409 3934978 ~ 3949420 (+) False AMCG00015173
AMCG00015170 mRNA upstream 53165 3914494 ~ 3916664 (+) False AMCG00015170
AMCG00015172 mRNA upstream 67491 3894791 ~ 3902338 (+) True AMCG00015172
AMCG00015171 mRNA upstream 80912 3884470 ~ 3888917 (+) True AMCG00015171
AMCG00015168 mRNA upstream 147366 3794466 ~ 3822463 (+) True AMCG00015168
AMCG00015176 mRNA downstream 98399 4070082 ~ 4112144 (+) True AMCG00015176
AMCG00015185 mRNA downstream 216784 4188467 ~ 4196925 (+) True AMCG00015185
AMCG00015183 mRNA downstream 226803 4198486 ~ 4213829 (+) True AMCG00015183
AMCG00015184 mRNA downstream 244061 4215744 ~ 4218912 (+) True AMCG00015184
AMCG00015190 mRNA downstream 329952 4301635 ~ 4304037 (+) True AMCG00015190
TU119665 other upstream 327629 3641940 ~ 3642200 (+) True G95955
TU119395 other upstream 1002502 2965301 ~ 2967327 (+) False AMCG00015142
TU119344 other upstream 1146069 2820467 ~ 2823760 (+) False G95704
TU119325 other upstream 1161334 2806811 ~ 2808495 (+) True G95693
TU119243 other upstream 1303703 2664504 ~ 2666126 (+) True G95624
TU119757 other downstream 117518 4089201 ~ 4100140 (+) True G96030
TU120035 other downstream 904438 4876121 ~ 4879896 (+) True G96264
TU120099 other downstream 1049683 5021366 ~ 5022052 (+) True G96317
TU120210 other downstream 1417254 5388937 ~ 5391723 (+) True G96415
TU120220 other downstream 1455196 5426879 ~ 5464117 (+) False G96420

Expression Profile