RNA id: TU119735


Basic Information

Item Value
RNA id TU119735
length 887
lncRNA type read_through
GC content 0.52
exon number 4
gene id G96010
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3903697 ~ 4039218 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccctccttctctctctctttctctgctcaGCTTTACAGTGCAGGGAAGTTGCAGGGCAACTGCGGCAGATCGATGTCAGCGCGGGGCAGGTTTTTGGCACCAATACAGCTGACGCCATCTTCACCCTGTACGGGGGGACCTGGACTCAGCTGCCCGGGGCACTCAAGCATGTCACGGTCGGGCCCTCGGGCGTCTGGGGCGTTAACAGTGCCAACGCCATCTTTAAGCTGGTGAATGCCAACTGGGTACAGGTGCcagGTCAGCTGAAGCAGATTGATGCTGGTGGTGTCCAGTTCGTGGCCGGGGTCAACACTGCAGACAACATCTTCTGTCTTGGACAGGATGCCACAGTGGGGTACAAGGGCCCTGGCTCCCCCACCCCCTGGCAAGGCATCCCGGGGGCTCTCAAGTACTACAGCTGTGGGCCCCTGGGTTGCTGGGGGGTGAATGCCGCCGAAGACATTTTCGTGAGGAAGGGGGTGTCTCCACAGCAGTGCCAGGGGACAGGGGATTGGCAGCAGGTGGACGGGAAACTGTCCATGATAGAGGTGGGCAGCGAAGGCAGTGTGTATGGGGTCAATGCTGCCGGGGACATTTTCTACAGGAATGGGATCACTAGCACTAACCCTGCAGGCACTGGCTGGACCCCACTAATCATGTGTGCGAAGAGCAAGCACGTGTCCTTTGACCTGGGTCATCTGTGGGTCATCACCCAAGATAACCGGATCTTGGACTGCAGCTGAGCGCTCACAGCCAGCAGAGACCTCACAactttctttgtgtttgcaataaatatgaatctttaaagatatttttaaaagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataca

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119690 lncRNA downstream 95695 3871076 ~ 3871334 (-) True G95978
TU119680 lncRNA downstream 236710 3729999 ~ 3730319 (-) True G95968
TU119668 lncRNA downstream 348731 3617773 ~ 3618298 (-) True G95957
TU119672 lncRNA downstream 363352 3602604 ~ 3603677 (-) True G95960
TU119642 lncRNA downstream 494103 3472207 ~ 3472926 (-) True G95933
TU119835 lncRNA upstream 73038 4112256 ~ 4123963 (-) True AMCG00015180
TU119860 lncRNA upstream 176509 4215727 ~ 4216894 (-) True G96110
TU119865 lncRNA upstream 212664 4251882 ~ 4255484 (-) True G96115
TU119876 lncRNA upstream 262414 4301632 ~ 4301940 (-) True G96125
TU119878 lncRNA upstream 275475 4314693 ~ 4314916 (-) True G96127
AMCG00015175 mRNA downstream 62497 3902828 ~ 3904532 (-) True AMCG00015175
AMCG00015169 mRNA downstream 141992 3815946 ~ 3825037 (-) True AMCG00015169
AMCG00015164 mRNA downstream 359932 3603683 ~ 3607097 (-) True AMCG00015164
AMCG00015163 mRNA downstream 502218 3416852 ~ 3464811 (-) True AMCG00015163
AMCG00015161 mRNA downstream 552827 3408589 ~ 3414202 (-) True AMCG00015161
AMCG00015180 mRNA upstream 71101 4110319 ~ 4112706 (-) False AMCG00015180
AMCG00015181 mRNA upstream 92184 4131402 ~ 4163989 (-) True AMCG00015181
AMCG00015179 mRNA upstream 128143 4167361 ~ 4169016 (-) True AMCG00015179
AMCG00015177 mRNA upstream 142734 4181952 ~ 4184519 (-) True AMCG00015177
AMCG00015188 mRNA upstream 167057 4206275 ~ 4209529 (-) True AMCG00015188
TU119671 other downstream 359837 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 616587 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 769840 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 777936 3186169 ~ 3189093 (-) True G95850
TU119447 other downstream 986621 2978197 ~ 2980408 (-) True G95791
TU119841 other upstream 135661 4174879 ~ 4180441 (-) True G96094
TU119954 other upstream 578493 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 739175 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 928832 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 946354 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile