RNA id: TU119865


Basic Information

Item Value
RNA id TU119865
length 3581
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G96115
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4251882 ~ 4255484 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATGTTTGTGTGGCTGTGATATTTGGGCGTCTGTGGTGTGATTCTGCCCTTCATGCGGCTTTTCTGTCCTACATTGTCAATTGCTCAGAGACCCCACCGAAAACAGGCTTCCAGTATCAGCAACATAGTGGTGTTGTACATAGTGTTGTTTGGCCCGGCATTTAGAGATTTCGAACAACAGGCTTACTTGCAAACAGCAGCTTGATTCCCCTTCAAGAACCAGACCTGCCTTCCCTGACCAAGAGACTGCACTGGACAAGACCAGACCAGaccagactggactggactggactgggccAGCTTCATCTTGAGTCGAATTCCCTTTCTGTCCTGCCTTACAGTTCGCATGAGGAAAGCCACACGGTGAGAGGACAGGACTGTCTGAGAGGCAACTGCACACGTGAACAGCACCGTCACACTGCACCCAAGCAGTCACCACAACCACTCCCTTAAAGAAGTTAAACCTCAATTAGCCCTGGGCTGCCATAGTCAACATGCCTTAGAGATCTTATCAagaatgatattattattaatattgaattgtattgcttattttatgtgtttactTTGCTTCATTTAACATGGTGCCAAGATTCTCAAACCACTGTACAgacagaaaaattaaaacaagttacAGGTCACAGGGATGAAAGCAGCTCTCAGACAAGGGGTTTAGATCTGGCTAATATTGTCCATGTCCCTAATATTTGTCTATGAGGAGTCTGCTGTAATTTAGGGGGATAACGTGTGACACATAACCATCATGGGGGGACCACAACCAAGCCGAAACCGAACTCAAGCTATTGCCCTACAAACTGGCTCTCATGAAAAGATCACCCCTGTCCCCAGGAGAGCTCTGTCTGCCTTCCTACTGGCAGGCCGAAACGAGCGGATTCGAACAAGGCACGTCGCTGGTGATTACTTCACAAAGGCCAGATGCGTGCAAGTGGCAAATGTGTGCCATTGAGAGTGTTTTTTGCATCTGAAATCGATCAGTGTGCTACTTTGGGCCGAAGTGTAAAAACAGACAGGAGACTTACTGCACCGGTGTGTTATCTGCAAAATCAATCAGATCTACACAGTTATTGCTGTTTGCTCTTAGTAATAACGGAGGGGGGTGTATCTTTCACATTGGCGCTGGATGGTATTTCCCCATGGTCCAGTGTAGCAAAGCTTAGATTGGGCAGGTTCAAAGTGCTGACAGTAAGTGTAGTAAGGTAGCTGCGCTGACCGGACCTGGGCTGTACTTGGCAATGGGCCAATTGCAAATTCCccctttacaaaaataaatagttctgaaatgaaacctcaGTCAGATTGTGCCTCTTAGGTGGAAGTTGGGTTTTCTGTGTAATGTTGAATCATGCAACCACAATagagaggtgggggggctgCTAGTAAGACTGAACCCGGAAACCAGAACCACAAATTGtgcactgcaaaacaaacatataggAGCACTGAGGTGGGGGCGGCTTTCAGCTGTGCATCTCTGAGGTGTGATAATGTGACTAAATATGATTAACTGAGTAGATACAGGGGTTAATTGTTACACAGAGGTGAGAGAGCTGTATTACTggcaaaaatgcaaatattaatagGAGCCAGCCAGTCACctacagcaggggttcccaGAACCAACCaaccaattacttaattggaccctaattgaagtaaaaatctgcttagattttaacattttaaatagtgtaatagaagagttggttctttaataagttatttatacaattatatacttcacttaaaacccctactgttaaaaatgattaaaagacTGATTTGTGAAATTATGAGTTCAAAtatgggttcaattaagtaattgagagctcggttggcacaaaaaccagcaggatacggggtcctccaggagcagggttagGAACCACCGGGGCCTGCAGTACAGTAACTCTCTCAGGAAGGGGAGGTTCTCGGTCAGTTCTCCTGATCACTGGTGCCTGCCCACCCAGTCTCACTATTTAACAGCCACTGCCTAAAACTGTCTTCACACAAAGCACGTCTCAAAATAGACCACGTGGGGCTGGAGATGCCAGAATCTGAGGGGAGAGAGCTCAGAACGAGGAACAAGACTTCAAACTGACATCATGACTTCTGAGGGATCAGTGAAAGTgttcaacaaattaaaaaaatcagccCGTGACTGATGATCGGGCCGGGTTTTGTAAAACAGTTAATTTAGCAATTAAAATTTCAATTAGCAAGTAACAATTCAATGAGCAACTAACAGTTCAATTAACTAGATAACCGAAGAGTTAAATAAACAAGATTGGGATGTAGGGATTCTGTGGGTCCGGTGGCTTAGCTGTCTTGTTGAATTGACCATTTGCATCGTCAGCGTCACACAGGGGCCTGTTCACGCATGAGTCAGAGAGCAGTGCATTTCTAGGACGGTGTTGAAttgtagcatttaaaaaactgcAACCATTATATATGTGGCATGAAGTTGAACATGAGAAGGCAGGCATTCTGGACttcaatgtctttaaaaaaaaaagtcaagctaCAGATATcttttaaagcagtggttctcaaccctgctcctggaggagcccctaccctgctggtttctgttccaacagaactctcaattacttaattgaacccttcattgaagtaataattagcttatatttgaattgttttaattgtgtaactgataaaaagttggttctttaataagatATGTTCCTTTTACAactttatacttaacttaaaaacccaactgtttaaaataattacaaggcTGTGTGATTTAGGAAGTTATTAATtcagtgttcaattaagtaattgagaactcgGTTGCAACAAAACCACTGGGGTAGTTGAGAATCACCGCTTTAAAGGGAGGTAAGACTTGTCAGTGGTGTGCAAATTGACAAACAAGGCACATCACCTTCCCTTTTTCAGGCCACATCTTATCTGCCAGACGAGGTTATATGGGTCGAGCAGATTGCTGAGTGTTAATTCACTGagtattttctttcattccaCTTGTTTTTTTGAATTGTGACCAACATAGTCACCTGTTTCAGTTCACGGGCATGGGGGGAAACACAGCACAATGACATAAACCCCAATCGATTCAATTCGGCGCATTTGCTGAGTCAGTGGCTCCATCGAGTGACATCTGTAGCATTATAAAAGCTTTGAAAGGTTGACGTGTGACTGTCCCCTGAGTGCAGGCCTTGTTAACAGCTGGGGGACAGCACTGAATCTGATAATGCCCTGTGAACTATTTCATCGGTGTCGgtagtgtctgtgtttttaaggcCTGTGGCAGACGCAGACACTGTGCTCATGAACCGAGCTCAGAGTCAACACAGATGGCAGCTCCATCCTCAAGTGTTATCCTCACTTCCCTGGATAATCTATATCATGTTGCTGTTTTATCTTGCAGCCCTGACTACTGAATGTGTTACTGTGTGATTGTTGtactttcattctctctctatatatatatactatagtCCATACAGTGCTAGCTCTCATGTGGGTATACTATACAAATCAATATTCATATATCTGCATTTCTTCCTTtaa

Function

GO: NA

KEGG:

id description
ko05100 Bacterial invasion of epithelial cells

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119860 lncRNA downstream 34988 4215727 ~ 4216894 (-) True G96110
TU119835 lncRNA downstream 127919 4112256 ~ 4123963 (-) True AMCG00015180
TU119736 lncRNA downstream 212664 3903697 ~ 4039218 (-) False G96010
TU119735 lncRNA downstream 212664 3967029 ~ 4039218 (-) True G96010
TU119734 lncRNA downstream 214711 3901812 ~ 4037171 (-) True G96009
TU119876 lncRNA upstream 46148 4301632 ~ 4301940 (-) True G96125
TU119878 lncRNA upstream 59209 4314693 ~ 4314916 (-) True G96127
TU119879 lncRNA upstream 60713 4316197 ~ 4316936 (-) True G96128
TU119881 lncRNA upstream 65554 4321038 ~ 4321271 (-) True G96130
TU119882 lncRNA upstream 73612 4329096 ~ 4329398 (-) True G96131
AMCG00015188 mRNA downstream 42353 4206275 ~ 4209529 (-) True AMCG00015188
AMCG00015177 mRNA downstream 67363 4181952 ~ 4184519 (-) True AMCG00015177
AMCG00015179 mRNA downstream 82866 4167361 ~ 4169016 (-) True AMCG00015179
AMCG00015181 mRNA downstream 87893 4131402 ~ 4163989 (-) True AMCG00015181
AMCG00015180 mRNA downstream 139176 4110319 ~ 4112706 (-) False AMCG00015180
AMCG00015186 mRNA upstream 783 4256267 ~ 4257343 (-) True AMCG00015186
AMCG00015187 mRNA upstream 20286 4275770 ~ 4281629 (-) True AMCG00015187
AMCG00015192 mRNA upstream 35113 4290597 ~ 4293297 (-) True AMCG00015192
AMCG00015191 mRNA upstream 39949 4295433 ~ 4300203 (-) True AMCG00015191
AMCG00015194 mRNA upstream 109952 4365436 ~ 4371175 (-) True AMCG00015194
TU119841 other downstream 71441 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 644690 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 901440 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 1054693 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 1062789 3186169 ~ 3189093 (-) True G95850
TU119954 other upstream 362227 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 522909 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 712566 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 730088 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 730088 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile