RNA id: TU119879


Basic Information

Item Value
RNA id TU119879
length 740
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G96128
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4316197 ~ 4316936 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCATTATCTTTTATTCATGAAGATACATGAACATCAATGATTGACACCAACAAACCATGTGACAGAAGACATCTATACTGTGGTATCTGATTGGTCAAAATCACAGTGTGACTGTGACAAATCAGCCCTTATGACAACGCACTTGCAAATCTCTCTGTGCACGTGTGACTCGTCCAGAAGATGCCTTCATGTACATACATGCACGCATGCAACACAGTCAGGATCAACCCTCCCCCCTCCCATACACACGTCTCAGATATGGCCCTGGGGAAATCTTAGAATTCTGCCAAAAGTAGGAAACCTCATGTCTGATATGTaaatagtattaaaaaatatatacatctatatatttatttttttaatactattttttttgttccattgTTACGAAAACCTCAATTTGCAAAAGTAAAGCAAACATTTCTGCTTTACATAAACTGTCAAGGTTGGTGTCAATTTACAGAATTAcgctctttttaaaataaaaatacaattgtacagATACAGACTTTTCTTGGTTTTCGAGTAATAATTGAAATGCCTTAACTGGCATTATCAGGAATGCACAGGAGGGATGTAGACTTTGGGGAATCTAAAGGGTTAAAGTGTGTGGAACATTCTAATGCTCAGGAGAGGGGAAGGTTTAACCCGGTGAAATGCTGTCACCTGGTGGGCAATGTAACTGCGAGCTGCCTCACCTTTGCCAAGCCTTCCACCCTGACGCATCAGTTTCTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119878 lncRNA downstream 1281 4314693 ~ 4314916 (-) True G96127
TU119876 lncRNA downstream 14257 4301632 ~ 4301940 (-) True G96125
TU119865 lncRNA downstream 60713 4251882 ~ 4255484 (-) True G96115
TU119860 lncRNA downstream 99303 4215727 ~ 4216894 (-) True G96110
TU119835 lncRNA downstream 192234 4112256 ~ 4123963 (-) True AMCG00015180
TU119881 lncRNA upstream 4102 4321038 ~ 4321271 (-) True G96130
TU119882 lncRNA upstream 12160 4329096 ~ 4329398 (-) True G96131
TU119883 lncRNA upstream 12674 4329610 ~ 4329809 (-) True G96132
TU119884 lncRNA upstream 15579 4332515 ~ 4332772 (-) True G96133
TU119885 lncRNA upstream 20073 4337009 ~ 4337271 (-) True G96134
AMCG00015191 mRNA downstream 15994 4295433 ~ 4300203 (-) True AMCG00015191
AMCG00015192 mRNA downstream 22900 4290597 ~ 4293297 (-) True AMCG00015192
AMCG00015187 mRNA downstream 34568 4275770 ~ 4281629 (-) True AMCG00015187
AMCG00015186 mRNA downstream 58854 4256267 ~ 4257343 (-) True AMCG00015186
AMCG00015188 mRNA downstream 106668 4206275 ~ 4209529 (-) True AMCG00015188
AMCG00015194 mRNA upstream 48500 4365436 ~ 4371175 (-) True AMCG00015194
AMCG00015193 mRNA upstream 91549 4408485 ~ 4424905 (-) True AMCG00015193
AMCG00015195 mRNA upstream 119609 4436545 ~ 4452947 (-) True AMCG00015195
AMCG00015199 mRNA upstream 302428 4619364 ~ 4630222 (-) True AMCG00015199
AMCG00015202 mRNA upstream 353768 4670704 ~ 4679051 (-) True AMCG00015202
TU119841 other downstream 135756 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 709005 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 965755 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 1119008 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 1127104 3186169 ~ 3189093 (-) True G95850
TU119954 other upstream 300775 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 461457 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 651114 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 668636 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 668636 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile