RNA id: TU119901


Basic Information

Item Value
RNA id TU119901
length 1591
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G96148
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4390840 ~ 4392980 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAGGTAAGTCAGACCAAGGACCTTTGTATGCCTTCAGCCGATTGTAATGTACAATCCATGATTTGGATCGTGGATCTTTTGGGTCAGTGATTTCATAGGTCACGCCAGGACAACCATCTTTATCCACCCTCTTCAGAACTCTATACGGCCCTTTCCATCTAGGAGCAAGTTTATTCCTTTGATTGGCAGGATCATCAAGGAAAACAAGATCACGTTCAGCATAGGGATTAAAAGCAAGCTTTTGATCATAGTGAGTCTTTTGCAGTAGTTTAGATTCTTTCGACTGCTCAGCGGCCATGTCAAAAGCATGTGACAGGCGGTTAAGGACATCCTGGGCATAAGCAGCAGGTGTGCCCGGAGTTGCTTGAGTAGTGAATGGACTGCAGTTCAACAAAACGTCCACAGGCAGATGAGGTTCCCGACCATGAGCAAGGAAAAATGGAGTATATCCAGTACTGGAATGTACACTTGAATTGTACGCAAGTTCCACCTGTGAGAGGTATTTGTCCCATTCTCCTCCATTTTGGTAGATGTATTTAGCTAATTGGTCTTTTAATGTCCGGTTCAGTCTTTCTACCATGCCATCTGATAGGGCATTGTATGGAGATGTTCGTGTCTTCTCAATTCCCAACTTGCTACACAGCTGCCTCACCAGATCAGACTCAAACTGTCTGCCCTGGTCAGTGTGGATGGACTCAGGTATGCCATGTTGACGAATGAAGTCTTCAAACAAGCATTGAGCTACACTTGTTGCACGCTGATCTTTTAAAGGAAAGAGATTCACATAGCGTGTAAAATAATCCATTACAACAAGAACATACCTGTTGCCTTGTGAAGTGACTGGTAGCTTGGTGAGGTCAGCAGCAATTTTCTGGAATGGACGATCCACCACAATAGGTTGTAAAGGAGCTCTAGCTTTTGGTGTTGGAGCACTGCGAGTCTGACATGTTAAACACTCTGTACAGAACTTGTAAATTTCACGTGACATGTAAGGCCAATAGCAGATTTTTCTGGCTCTCTGCAAAGTTCGTTCAGTCCCTAAATGTCCACTGAAGACATTTCCATGCAGGTATTTGAGGGCTGTCTGAATGAGGGATTCAGGAAGGACCAATTGGTAAGTATAGGCTTTCTGCAGAAAGGTTTTAATTTTTCGACAGAGGATCCCATTTTCCGAAGTCAGGCGAGGAAACTCATACCAGAGCTTTTTCAGAGCTGACGGGGAGTTTTTGATTCATCGTGCAGTAGGTCTTCGGTTAtccatttctttccatttcatcaCAGTTCTCAGAATGACATCCGCTTGTTGTTTCTGCTTCAGTTCATCAATGTTTATTGCTAAATCTTCACAGGTTTGTCTTACAGGAACAGTTTGTTCAGGCTGTAGTTCAGAAGATCAACTGTTTTGCATCTTTTTGGGCAAAGTTTTTAACAAATCGTCTGTAATAGGAACAGAGACCCACAAAAGCTCTCACCTCAGTAGGTGTTCTTGGTGTTGGCCAATCTTTCACTTTGTCCAGCTTCCTGGAATCTGGTCTGAGACCACCCTTGGTGATTACATGTCCCAGAAAAGAGACTTCATCCCATGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119887 lncRNA downstream 46771 4343868 ~ 4344069 (-) True G96136
TU119885 lncRNA downstream 53569 4337009 ~ 4337271 (-) True G96134
TU119884 lncRNA downstream 58068 4332515 ~ 4332772 (-) True G96133
TU119883 lncRNA downstream 61031 4329610 ~ 4329809 (-) True G96132
TU119882 lncRNA downstream 61442 4329096 ~ 4329398 (-) True G96131
TU119972 lncRNA upstream 275923 4668903 ~ 4669286 (-) True G96208
TU120042 lncRNA upstream 489089 4882069 ~ 4889321 (-) True G96271
TU120071 lncRNA upstream 501774 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA upstream 501774 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA upstream 501774 4894754 ~ 4911505 (-) False G96300
AMCG00015194 mRNA downstream 19665 4365436 ~ 4371175 (-) True AMCG00015194
AMCG00015191 mRNA downstream 90637 4295433 ~ 4300203 (-) True AMCG00015191
AMCG00015192 mRNA downstream 97543 4290597 ~ 4293297 (-) True AMCG00015192
AMCG00015187 mRNA downstream 109211 4275770 ~ 4281629 (-) True AMCG00015187
AMCG00015186 mRNA downstream 133497 4256267 ~ 4257343 (-) True AMCG00015186
AMCG00015193 mRNA upstream 15505 4408485 ~ 4424905 (-) True AMCG00015193
AMCG00015195 mRNA upstream 43565 4436545 ~ 4452947 (-) True AMCG00015195
AMCG00015199 mRNA upstream 226384 4619364 ~ 4630222 (-) True AMCG00015199
AMCG00015202 mRNA upstream 277724 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015203 mRNA upstream 387005 4779985 ~ 4787937 (-) False AMCG00015203
TU119841 other downstream 210399 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 783648 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 1040398 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 1193651 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 1201747 3186169 ~ 3189093 (-) True G95850
TU119954 other upstream 224731 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 385413 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 575070 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 592592 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 592592 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile