RNA id: TU119954


Basic Information

Item Value
RNA id TU119954
length 596
RNA type TUCP
GC content 0.52
exon number 3
gene id G96191
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4617711 ~ 4619264 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATCTCTCAGGAAGGGAGCAGAGGGGCTGACAGGATCTCTCCACAGCAGACACTGAGCAGCCCACTGGAGCAGCACAGTCTGTGAGCCATTACTGATTCCCTGCAGCTCTACAGCAGcgcacactggcacactgacacagGCAGAGAGAGCAGACACAGGGAAGTGCAGCAGCAGCTATGGATGTGAGGGCAGCTGTGTTCCTGGGACTGCCTCTGTCAATACTGCCTGGTGCGCTCGGTGGTGCTCTGGTGGTGATGTATCCATTGTCACAGATCTGTGCCCTGAGGGGCTCCTCTGTGCTCATACCCTGTACCTACGATTATCCTGACAGTGCCACAGTGACAGAGAGGAAGTGGACGAATTTACCAAATAATAGTAACTGGGATGCCCCCCCCTTTATTTATCACAGTAGAGGGGAATCTCTTGACTTTCACTACATAGGCAGAGTGCAGTATACTGAACAAGACAAGAGCTGCAGCTTCATGTTGACGGGTATAAGGAGCTCTGACAGCAGGAgttattatttcagaataacaATAGACAGATCCCCCAGAGCAAGCATTGGTCTGCCTGGAGTACATCTCAGTGTTGCTG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119901 lncRNA downstream 224731 4390840 ~ 4392980 (-) True G96148
TU119887 lncRNA downstream 273642 4343868 ~ 4344069 (-) True G96136
TU119885 lncRNA downstream 280440 4337009 ~ 4337271 (-) True G96134
TU119884 lncRNA downstream 284939 4332515 ~ 4332772 (-) True G96133
TU119883 lncRNA downstream 287902 4329610 ~ 4329809 (-) True G96132
TU119972 lncRNA upstream 49639 4668903 ~ 4669286 (-) True G96208
TU120042 lncRNA upstream 262805 4882069 ~ 4889321 (-) True G96271
TU120071 lncRNA upstream 275490 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA upstream 275490 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA upstream 275490 4894754 ~ 4911505 (-) False G96300
AMCG00015195 mRNA downstream 164764 4436545 ~ 4452947 (-) True AMCG00015195
AMCG00015193 mRNA downstream 192806 4408485 ~ 4424905 (-) True AMCG00015193
AMCG00015194 mRNA downstream 246536 4365436 ~ 4371175 (-) True AMCG00015194
AMCG00015191 mRNA downstream 317508 4295433 ~ 4300203 (-) True AMCG00015191
AMCG00015192 mRNA downstream 324414 4290597 ~ 4293297 (-) True AMCG00015192
AMCG00015199 mRNA upstream 100 4619364 ~ 4630222 (-) True AMCG00015199
AMCG00015202 mRNA upstream 51440 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015203 mRNA upstream 160721 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015209 mRNA upstream 250750 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015208 mRNA upstream 251790 4871054 ~ 4872720 (-) True AMCG00015208
TU119841 other downstream 437270 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 1010519 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 1267269 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 1420522 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 1428618 3186169 ~ 3189093 (-) True G95850
TU119993 other upstream 159129 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 348786 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 366308 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 366308 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other upstream 366308 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile