RNA id: TU120042


Basic Information

Item Value
RNA id TU120042
length 787
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G96271
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4882069 ~ 4889321 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTCAGTGCAGCACAGCGAGATCAGGGCAGGAGAATTCAGCCAGTCGAGACGTTTAGGACTAACACAGTCTGTGCCAGAGTCGGGCTCCTACTGCTCtactctcctctcctcttcacTTAGATCCCCTCAACACCTGCCCTCTCCTCTCTTTTCTTCATCTCTCTTCTTTATTCCTCTCTGCATCGGCCTGAGATGGGCAGATTGTCCTTGTGTCTTCTACCTCCCCTGGTTGGGCTGTTTGGTCATGTGGCTGCCCAGCAATACTGCCAGTCTTGCTACCATCTGGATATAGGCACGGCGGTGGCCATCATCGTGGGTGACATCATACTCACCCTCTTCATCGCGCTCTCTGTGTTTTGCCTAGTCTCCCGCATGAAGAAAAGCCAACTGGAGGCACTGGAAGGTCGGtgtatgcttgtgtgtgtgtacatatgtgCATTTACAggtgtatgtacagtatttatattCTGACTTGCTCTAGGCTGGCATAGCCTTGATTGACCCAAGTCCTGTAGCAGGGTCAGAATTTGTTGATGGAGAGACACCTGAAAAATGTGCAGTACTCTGGCCCTAGGATTAGATTTGGATTCCCCCATAAAACTTCCATTGTTTGGGTTCCAGCTATTGATAGGGGTGATGATTTGGTAGGTAGGTAATGTTTTGAAGTAATGATTATTCATGACACATCTATTTAGTCTGTACAGGAGCCTAATCTCCTGTGATGCTCAGCACTATTGGTTTTATGCACTTTCTTATTTAACTATGCTTCTTATGCTCCTGATTAC

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119972 lncRNA downstream 212783 4668903 ~ 4669286 (-) True G96208
TU119901 lncRNA downstream 489089 4390840 ~ 4392980 (-) True G96148
TU119887 lncRNA downstream 538000 4343868 ~ 4344069 (-) True G96136
TU119885 lncRNA downstream 544798 4337009 ~ 4337271 (-) True G96134
TU119884 lncRNA downstream 549297 4332515 ~ 4332772 (-) True G96133
TU120071 lncRNA upstream 5433 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA upstream 5433 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA upstream 5433 4894754 ~ 4911505 (-) False G96300
TU120078 lncRNA upstream 5433 4894754 ~ 4911505 (-) False G96300
TU120089 lncRNA upstream 96251 4985572 ~ 5005512 (-) False AMCG00015211
AMCG00015208 mRNA downstream 9349 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 11040 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 94132 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015202 mRNA downstream 203018 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015199 mRNA downstream 251847 4619364 ~ 4630222 (-) True AMCG00015199
AMCG00015210 mRNA upstream 78969 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015211 mRNA upstream 97487 4986808 ~ 5083187 (-) False AMCG00015211
AMCG00015217 mRNA upstream 200513 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015216 mRNA upstream 229877 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 274086 5163407 ~ 5166705 (-) True AMCG00015220
TU119993 other downstream 79165 4778393 ~ 4802904 (-) True AMCG00015203
TU119954 other downstream 262805 4617711 ~ 4619264 (-) True G96191
TU119841 other downstream 701628 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 1274877 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 1531627 3349879 ~ 3350442 (-) True G95921
TU120086 other upstream 78729 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 96251 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 96251 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other upstream 96251 4985572 ~ 5005512 (-) False AMCG00015211
TU120133 other upstream 165580 5054901 ~ 5073806 (-) False AMCG00015211

Expression Profile