RNA id: TU120074


Basic Information

Item Value
RNA id TU120074
length 2199
lncRNA type inter_gene
GC content 0.42
exon number 6
gene id G96300
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4894754 ~ 4911505 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGCATCGGGGCAGATGCAGCAGAGTACTCTTTCAGATAAAAGAGAACCgGTGGGAGTCTGATGTCTCCAGGAAGGGGGTCGATCAAAAGCGACGTCACTGATGCAGGGTGGTATCCAAACGTCCTGAAACTAAAGATTTAAGACCGAAGAAACGCAAGACTCATAAACTTCCGGCTCTGCTACTTGTTACAGGGGTAAGGAAATTTGACTCCCATGTGTTGGAACTGACAGACGAAATGGTCAACCAAATGATCTTGTTATTTCTTGCCCTACTCCCTTGTGTGGCAGAAACTGCTCAGGCACAAGGACACACAGATTGTGGCAATTGTTATAAGATTGAACCAGGCGCCATGGTGGGCATCATCATCGGGGACGTGATCCTGACTGTGTTAATCGTCATCTCTGTCTATTACTGCGCCAGCCGCAAGAGACAGAAGAGAGAACAAGCTGATAAAGTCTACATGAACGTCAGAGCGAACGTCAAAGCCTGAAGCCCGAAATGCTTTCCTGCAGTGTGCGCCTGCCTCTCCTGCACTCTGTCCGTCTCTCCACACCAGCCTCCTGGAGCCAGATCCAGGGCCGAGGCCACCAGCCGACTACTACTATCAACTGCTTCTGAAGAGAAAATCGTGAAGATTGTTAATGGAAGGATGACTGCAAATCTGTCAGATCTCTGCCCTTCCCTTTTACCACATCACCCTGTCAAATGATCAGTCAATTGGTATCTTGGTTAGAATGTCTATAGATCTGGAATAGGACACCTTGACACTTCCATTCCCTTCCAACCACCCCCCTTGCCCTTCCCCTACAAATAAGAACAATTCTCTTACACTTTATTCCATCCTGGAACTGCCACTGGACACACATATCAGCCCAACAGAGAGTTGAAAACAACCCATTAGCATGCAACAGCAAGCTTCCTCTGAAATGTACTTCCTGTTTAAAGAATGAAGATGTCCAAGGAGTTCAAAGCTACAGGGTCAGGGCTGCAACCCCAGAATCCTGGTCGCAGAGGGCTAAGGAAATGACCTGCCATGTCTGCGCCCTCAGAGCAAAAACTTTTACTGCGTTTCCCTCTTTATTAAAGAAGAGATCGATCCTCTGCAGCCTGAGTGAAGGAACTAAAGTCTGATGGGTCAGTGAGGCGAATCCTGAGCTATGGTGTCAAACTCCAGTCCTGGTTTCCCTCCAGGAGCAGTAGCTCTCTAAATTACTCTGATGGAATGATTTGCTGTTATTTAAGGCTCTTCAAAGCTTTTTTCTCTCGAATCGCAAGcctgtatgtactgtactgtactgtactatgcTATGCTGTGCCTTTGCTATGCTTTTGTATTATGTACACCTTTCATCAGGAGAACACAAAAGGGCAATTGGAAAAGAATGGCATGTGTCTGAATTATGTGTTctcttattatatttgtaaagggCTTTGTACAATGAATGTGTTCATATCTATAGTTTTGGCTCTGAGACATATTGCTTGCTGCAATAATTTTGATAGACTGATGGAAGAATACTGTGTCTTGCTGATTCCTGAACCTCTTCTTGATTTTACCATTCCAGTTCCTCTCAGAGATGTTCTATCTGCTGCATTGAGGTTAGAACTCTGGAATATTTTCTTTAGTATATAATGCACTATAACATGCTAtgctatattatactatataccATTGTCTCTATGTATACGTAAGAGCTattatatattcagtatatatatttatttattatcagcaCACTTGCCCCTTACAGGaactttgtattaaaaataacaaaactggcATTCAAAACCATTCTGAtcacctgtttttttgttgatcAGTTAGTTGGTTGTCCCTCAGTCCTCTTATCTTCTCAATCAGTGTCTGGAGCTTAAGTGAAAAAGTTTGGCACACCCTCCCCCCAATTATAAACTTTTGAACAACTGGAATCAGTGACAATCCTACTTTATGAAGATTTGTAATGCTAGTAGGAATTAAtcctttattaaatattttctcttcCTCATGTTTGCCATTTCCtgaattctgaaattaaaaaaaaaacggacaATGAGTTTTCATTAGGAGCAAGTAACCTGCAGAACTAATAAAATTGTGCTAAGTAGGTATTATTAAGCTGTTAGGCTATGTGTTCTGTGTGTATTAACTTGAAGATTTGGATGCtacgaaaataaaatatgattttgaaaatcTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120042 lncRNA downstream 5433 4882069 ~ 4889321 (-) True G96271
TU119972 lncRNA downstream 225468 4668903 ~ 4669286 (-) True G96208
TU119901 lncRNA downstream 501774 4390840 ~ 4392980 (-) True G96148
TU119887 lncRNA downstream 550685 4343868 ~ 4344069 (-) True G96136
TU119885 lncRNA downstream 557483 4337009 ~ 4337271 (-) True G96134
TU120089 lncRNA upstream 74067 4985572 ~ 5005512 (-) False AMCG00015211
TU120092 lncRNA upstream 74067 4985572 ~ 5014397 (-) True AMCG00015211
TU120096 lncRNA upstream 104881 5016386 ~ 5016609 (-) True G96314
TU120101 lncRNA upstream 109755 5021260 ~ 5022065 (-) True G96318
TU120102 lncRNA upstream 109755 5021260 ~ 5022065 (-) False G96318
AMCG00015208 mRNA downstream 22034 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 23725 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 106817 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015202 mRNA downstream 215703 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015199 mRNA downstream 264532 4619364 ~ 4630222 (-) True AMCG00015199
AMCG00015210 mRNA upstream 56785 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015211 mRNA upstream 75303 4986808 ~ 5083187 (-) False AMCG00015211
AMCG00015217 mRNA upstream 178329 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015216 mRNA upstream 207693 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 251902 5163407 ~ 5166705 (-) True AMCG00015220
TU119993 other downstream 91850 4778393 ~ 4802904 (-) True AMCG00015203
TU119954 other downstream 275490 4617711 ~ 4619264 (-) True G96191
TU119841 other downstream 714313 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 1287562 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 1544312 3349879 ~ 3350442 (-) True G95921
TU120086 other upstream 56545 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 74067 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 74067 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other upstream 74067 4985572 ~ 5005512 (-) False AMCG00015211
TU120133 other upstream 143396 5054901 ~ 5073806 (-) False AMCG00015211

Expression Profile