RNA id: TU120096


Basic Information

Item Value
RNA id TU120096
length 224
lncRNA type intronic
GC content 0.44
exon number 1
gene id G96314
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5016386 ~ 5016609 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccttgacctcattccggcgcttactcaagacgcatcttttccgacagtacttgtaatattagtccttttatccctgctagatagcacttcacagttttattatgcgccttgtgcttttgattgttttcctccttgctccctttcccatagccattgactgtgaccctacatcttgacagcacttagcttttactgtccaggatgtaggacctcacttactgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120092 lncRNA downstream 1989 4985572 ~ 5014397 (-) True AMCG00015211
TU120089 lncRNA downstream 10874 4985572 ~ 5005512 (-) False AMCG00015211
TU120071 lncRNA downstream 104881 4894754 ~ 4911505 (-) False G96300
TU120072 lncRNA downstream 104881 4894754 ~ 4911505 (-) True G96300
TU120074 lncRNA downstream 104881 4894754 ~ 4911505 (-) False G96300
TU120101 lncRNA upstream 4651 5021260 ~ 5022065 (-) True G96318
TU120102 lncRNA upstream 4651 5021260 ~ 5022065 (-) False G96318
TU120114 lncRNA upstream 21681 5038290 ~ 5038491 (-) True G96329
TU120169 lncRNA upstream 140178 5156787 ~ 5157140 (-) True G96375
TU120179 lncRNA upstream 177214 5193823 ~ 5194138 (-) True G96385
AMCG00015210 mRNA downstream 40155 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015208 mRNA downstream 143666 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 145357 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 228449 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015202 mRNA downstream 337335 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015217 mRNA upstream 73225 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015216 mRNA upstream 102589 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 146798 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015219 mRNA upstream 181478 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015227 mRNA upstream 218523 5235132 ~ 5241035 (-) True AMCG00015227
TU120088 other downstream 10874 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 10874 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 10874 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 40036 4968050 ~ 4976350 (-) True AMCG00015210
TU119993 other downstream 213482 4778393 ~ 4802904 (-) True AMCG00015203
TU120133 other upstream 38292 5054901 ~ 5073806 (-) False AMCG00015211
TU120336 other upstream 739045 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 1032868 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 1361281 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1682248 6698857 ~ 6700357 (-) True G96766

Expression Profile