RNA id: TU120102


Basic Information

Item Value
RNA id TU120102
length 635
lncRNA type intronic
GC content 0.45
exon number 2
gene id G96318
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5021260 ~ 5022065 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTACATGGTCCCtcccatcgtccctttgatgcggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctcgattttggtctcatctgaccacaacactttcacccagttctcctctgaatcattcagatgttggcaaacttcagacgggcctgtacatgtgctttcttgagcagggggaccttgcggtccctgcaggatttcagtccttcatgttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggtgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgcttctgtggacaggtgtcttttatacaggtttATATCGTTACCTGTATACAAGACAccaatacttatttccctcattaacatgcaaatcaatttcaaaaaagttataaatgcgtttttctggattattttgttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120096 lncRNA downstream 4651 5016386 ~ 5016609 (-) True G96314
TU120092 lncRNA downstream 6863 4985572 ~ 5014397 (-) True AMCG00015211
TU120089 lncRNA downstream 15748 4985572 ~ 5005512 (-) False AMCG00015211
TU120074 lncRNA downstream 109755 4894754 ~ 4911505 (-) False G96300
TU120114 lncRNA upstream 16225 5038290 ~ 5038491 (-) True G96329
TU120169 lncRNA upstream 134722 5156787 ~ 5157140 (-) True G96375
TU120179 lncRNA upstream 171758 5193823 ~ 5194138 (-) True G96385
TU120256 lncRNA upstream 373828 5395893 ~ 5463028 (-) False AMCG00015230
TU120259 lncRNA upstream 376029 5398094 ~ 5559599 (-) True G96452
AMCG00015210 mRNA downstream 45029 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015208 mRNA downstream 148540 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 150231 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 233323 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015202 mRNA downstream 342209 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015217 mRNA upstream 67769 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015216 mRNA upstream 97133 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 141342 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015219 mRNA upstream 176022 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015227 mRNA upstream 213067 5235132 ~ 5241035 (-) True AMCG00015227
TU120088 other downstream 15748 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 15748 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 15748 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 44910 4968050 ~ 4976350 (-) True AMCG00015210
TU119993 other downstream 218356 4778393 ~ 4802904 (-) True AMCG00015203
TU120133 other upstream 32836 5054901 ~ 5073806 (-) False AMCG00015211
TU120336 other upstream 733589 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 1027412 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 1355825 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1676792 6698857 ~ 6700357 (-) True G96766

Expression Profile