RNA id: TU120111


Basic Information

Item Value
RNA id TU120111
length 234
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G96326
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5036038 ~ 5036271 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttccaaacttcttccatttacagatgatggaggccactgtgctcattgggaccttcaatgctgcagacatttttctgtacccttccccagatctgtgcctcgatacaatcctgtctcggaggtctacagacaattccttggacttcatggcttggtttgtgctctgaaatgcactgttaactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgtccaatcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119969 lncRNA upstream 365863 4669472 ~ 4670175 (+) True G96205
TU119968 lncRNA upstream 366648 4668893 ~ 4669390 (+) True G96204
TU119967 lncRNA upstream 367254 4668322 ~ 4668784 (+) True G96203
TU119928 lncRNA upstream 369189 4583697 ~ 4666849 (+) False AMCG00015197
TU119823 lncRNA upstream 642569 4388148 ~ 4393469 (+) True G96083
TU120129 lncRNA downstream 39762 5076033 ~ 5077903 (+) False AMCG00015212
TU120152 lncRNA downstream 64817 5101088 ~ 5104581 (+) False AMCG00015215
TU120178 lncRNA downstream 157701 5193972 ~ 5194179 (+) True G96384
TU120221 lncRNA downstream 396334 5432605 ~ 5465434 (+) False G96420
TU120226 lncRNA downstream 421562 5457833 ~ 5459048 (+) True G96424
AMCG00015207 mRNA upstream 78169 4952437 ~ 4957869 (+) True AMCG00015207
AMCG00015205 mRNA upstream 174222 4846954 ~ 4861816 (+) True AMCG00015205
AMCG00015204 mRNA upstream 197668 4806896 ~ 4838370 (+) True AMCG00015204
AMCG00015206 mRNA upstream 229653 4804650 ~ 4806385 (+) True AMCG00015206
AMCG00015201 mRNA upstream 253608 4768539 ~ 4782430 (+) True AMCG00015201
AMCG00015213 mRNA downstream 6230 5042501 ~ 5047188 (+) True AMCG00015213
AMCG00015218 mRNA downstream 28049 5064320 ~ 5065243 (+) True AMCG00015218
AMCG00015212 mRNA downstream 31776 5068047 ~ 5077892 (+) True AMCG00015212
AMCG00015215 mRNA downstream 48303 5084574 ~ 5119401 (+) True AMCG00015215
AMCG00015214 mRNA downstream 93070 5129341 ~ 5136836 (+) True AMCG00015214
TU120099 other upstream 13986 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 156142 4876121 ~ 4879896 (+) True G96264
TU119757 other upstream 935898 4089201 ~ 4100140 (+) True G96030
TU119711 other upstream 1064355 3969829 ~ 3971683 (+) False G95992
TU119665 other upstream 1393838 3641940 ~ 3642200 (+) True G95955
TU120210 other downstream 352666 5388937 ~ 5391723 (+) True G96415
TU120220 other downstream 390608 5426879 ~ 5464117 (+) False G96420
TU120218 other downstream 396334 5432605 ~ 5434022 (+) True G96420
TU120766 other downstream 1961362 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 1961362 6997633 ~ 7080788 (+) True AMCG00015293

Expression Profile