RNA id: TU120114


Basic Information

Item Value
RNA id TU120114
length 202
lncRNA type intronic
GC content 0.32
exon number 1
gene id G96329
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5038290 ~ 5038491 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CtttgttcagtttttccttttaattaaaggaTTTCTTAGTAatgatgctttatttaaaaagtgacttTTTGtactcattttatattatatatgtaatattgtgAATAATATAGAATGGTCAACAATCCCCCCTCAGAAGTGCCAAAACCTCATACAACACTGCCAGAGGCATCTTGTCATTCTGTGGCAGAGGAGAATTTAC

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG:

id description
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120101 lncRNA downstream 16225 5021260 ~ 5022065 (-) True G96318
TU120102 lncRNA downstream 16225 5021260 ~ 5022065 (-) False G96318
TU120096 lncRNA downstream 21681 5016386 ~ 5016609 (-) True G96314
TU120092 lncRNA downstream 23893 4985572 ~ 5014397 (-) True AMCG00015211
TU120089 lncRNA downstream 32778 4985572 ~ 5005512 (-) False AMCG00015211
TU120169 lncRNA upstream 118296 5156787 ~ 5157140 (-) True G96375
TU120179 lncRNA upstream 155332 5193823 ~ 5194138 (-) True G96385
TU120256 lncRNA upstream 357402 5395893 ~ 5463028 (-) False AMCG00015230
TU120259 lncRNA upstream 359603 5398094 ~ 5559599 (-) True G96452
TU120261 lncRNA upstream 369873 5408364 ~ 5451534 (-) True G96454
AMCG00015210 mRNA downstream 62059 4968290 ~ 4976231 (-) False AMCG00015210
AMCG00015208 mRNA downstream 165570 4871054 ~ 4872720 (-) True AMCG00015208
AMCG00015209 mRNA downstream 167261 4870014 ~ 4871029 (-) True AMCG00015209
AMCG00015203 mRNA downstream 250353 4779985 ~ 4787937 (-) False AMCG00015203
AMCG00015202 mRNA downstream 359239 4670704 ~ 4679051 (-) True AMCG00015202
AMCG00015217 mRNA upstream 51343 5089834 ~ 5113520 (-) True AMCG00015217
AMCG00015216 mRNA upstream 80707 5119198 ~ 5125146 (-) True AMCG00015216
AMCG00015220 mRNA upstream 124916 5163407 ~ 5166705 (-) True AMCG00015220
AMCG00015219 mRNA upstream 159596 5198087 ~ 5213200 (-) True AMCG00015219
AMCG00015227 mRNA upstream 196641 5235132 ~ 5241035 (-) True AMCG00015227
TU120088 other downstream 32778 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 32778 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 32778 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 61940 4968050 ~ 4976350 (-) True AMCG00015210
TU119993 other downstream 235386 4778393 ~ 4802904 (-) True AMCG00015203
TU120133 other upstream 16410 5054901 ~ 5073806 (-) False AMCG00015211
TU120336 other upstream 717163 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 1010986 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 1339399 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1660366 6698857 ~ 6700357 (-) True G96766

Expression Profile