RNA id: TU120290


Basic Information

Item Value
RNA id TU120290
length 234
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G96479
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5557251 ~ 5557505 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTGCGACGATGATTTGTTACCCagtgacaaatgcaatttaatagtGATAGACGATCTTATGGAAACAGCTAGCAACAATAGCGAAGTGGAGaaagcttttacaaaatatacacaccatAGAAATTTGAGCATCGTCTATCTAGgtaaaaagAGTCGAACGatcaatttaaatgctaattatattattattttcaaaaatcctAGAGATAAGCTGCAGGTGAACACTTTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120271 lncRNA downstream 91927 5432605 ~ 5465324 (-) True G96462
TU120268 lncRNA downstream 92584 5427736 ~ 5464667 (-) True G96459
TU120266 lncRNA downstream 93395 5426879 ~ 5463856 (-) True G96458
TU120256 lncRNA downstream 94223 5395893 ~ 5463028 (-) False AMCG00015230
TU120261 lncRNA downstream 105717 5408364 ~ 5451534 (-) True G96454
TU120352 lncRNA upstream 228892 5786397 ~ 5788847 (-) True G96531
TU120354 lncRNA upstream 234898 5792403 ~ 5792614 (-) True G96532
TU120450 lncRNA upstream 369954 5927459 ~ 6032127 (-) False G96609
TU120451 lncRNA upstream 379918 5937423 ~ 5972170 (-) True G96609
TU120469 lncRNA upstream 467863 6025368 ~ 6072079 (-) False AMCG00015257
AMCG00015240 mRNA downstream 15768 5540664 ~ 5541483 (-) True AMCG00015240
AMCG00015239 mRNA downstream 17195 5537803 ~ 5540056 (-) True AMCG00015239
AMCG00015238 mRNA downstream 19456 5537345 ~ 5537795 (-) True AMCG00015238
AMCG00015233 mRNA downstream 42426 5509511 ~ 5514825 (-) True AMCG00015233
AMCG00015230 mRNA downstream 146781 5394386 ~ 5410470 (-) True AMCG00015230
AMCG00015243 mRNA upstream 134153 5691658 ~ 5694064 (-) True AMCG00015243
AMCG00015244 mRNA upstream 196088 5753593 ~ 5757042 (-) True AMCG00015244
AMCG00015249 mRNA upstream 252529 5810034 ~ 5826236 (-) True AMCG00015249
AMCG00015248 mRNA upstream 271243 5828748 ~ 5843272 (-) True AMCG00015248
AMCG00015250 mRNA upstream 287671 5845176 ~ 5849429 (-) True AMCG00015250
TU120133 other downstream 483445 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 551739 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other downstream 551739 4985572 ~ 5005512 (-) False AMCG00015211
TU120091 other downstream 551739 4985572 ~ 5005512 (-) False AMCG00015211
TU120086 other downstream 580901 4968050 ~ 4976350 (-) True AMCG00015210
TU120336 other upstream 198149 5755654 ~ 5757109 (-) False AMCG00015244
TU120487 other upstream 491972 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 820385 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 1141352 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 1360261 6917766 ~ 6921641 (-) False AMCG00015288

Expression Profile