RNA id: TU120332


Basic Information

Item Value
RNA id TU120332
length 268
lncRNA type inter_gene
GC content 0.67
exon number 1
gene id G96513
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5755083 ~ 5755350 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGAGCTCACAGACCCAGCAGCCCAGGCAGCCCCACACTGCACGCCCTCGCTCTCCCGTTTCACCCCAGCTGACCCATGGCAGTGAGCGCTGGGCTCCCCGTGCAGAGGCCCCACAGGGTCCCTGCAGTCCCCATCCTCCTCCCTCTTAACCAGGGGGGCCCGCAACTCAGAGTCTTCTCCCACTGCCCCGAAGGCAGCGAGCAGCGGCgcgtccttgttttccatgtgtGCAGCCTGCTCCCGTCCAATCGAGAGAGAGGGCGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120329 lncRNA upstream 1828 5752168 ~ 5753255 (+) True G96512
TU120221 lncRNA upstream 289649 5432605 ~ 5465434 (+) False G96420
TU120226 lncRNA upstream 296035 5457833 ~ 5459048 (+) True G96424
TU120178 lncRNA upstream 560904 5193972 ~ 5194179 (+) True G96384
TU120152 lncRNA upstream 650502 5101088 ~ 5104581 (+) False AMCG00015215
TU120367 lncRNA downstream 109694 5865044 ~ 5919123 (+) True G96543
TU120401 lncRNA downstream 269995 6025345 ~ 6067602 (+) True G96568
TU120405 lncRNA downstream 296048 6051398 ~ 6064774 (+) True G96572
TU120426 lncRNA downstream 362265 6117615 ~ 6118160 (+) True G96591
TU120528 lncRNA downstream 515987 6271337 ~ 6273388 (+) True G96668
AMCG00015242 mRNA upstream 33418 5713705 ~ 5721665 (+) True AMCG00015242
AMCG00015235 mRNA upstream 72437 5681003 ~ 5682646 (+) True AMCG00015235
AMCG00015234 mRNA upstream 151728 5597046 ~ 5603355 (+) True AMCG00015234
AMCG00015236 mRNA upstream 184728 5560078 ~ 5570355 (+) True AMCG00015236
AMCG00015241 mRNA upstream 195310 5549195 ~ 5559773 (+) True AMCG00015241
AMCG00015246 mRNA downstream 17507 5772857 ~ 5788371 (+) True AMCG00015246
AMCG00015245 mRNA downstream 43143 5798493 ~ 5810929 (+) True AMCG00015245
AMCG00015252 mRNA downstream 204332 5959682 ~ 5972115 (+) True AMCG00015252
AMCG00015255 mRNA downstream 249957 6005307 ~ 6018242 (+) True AMCG00015255
AMCG00015253 mRNA downstream 272475 6027825 ~ 6035491 (+) True AMCG00015253
TU120220 other upstream 290966 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 321061 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 363360 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 733031 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 875187 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 1242283 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 1242283 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 1660019 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 2195460 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 2318831 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile