RNA id: TU120367


Basic Information

Item Value
RNA id TU120367
length 1343
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G96543
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5865044 ~ 5919123 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTATATTAAACCGGCactttattatttcagtatcAGTACTACACAACGAGggaacattttgtttagttttatacaaAAGGTAGCTGGTGAcagaccagtagtgtatatacagaccatgtacagtgcagcatttgaaaactgacaaatatcatctgtacaaatgtaaagttCAGCTATGTACTCGTAACACATCAACACATCAGCACACAAATTTGCGTGCAGGGCAGCTCGCAAAATCGCACACAAAGTAAGCAGTTagtaagaaaaaacacaggTACTGATTAAACACAGAAACTCAGCTTACAGGATTGTTTGGATCTACAATagacaatacaatttaatagaCTACAATAGATTGAGACTTAATTCAACTGCATATACAGAGAGGCAGATAAAATGATGCTTGAGTGATAGGCTGCAGGGCCCTGTGTGCAACACTAATAATCATCACTCGTACAACAAAATACTGCATGCtaaaacacagcagaaatgaatgagaaaaaggaaagagaaaaaaatataatgtaaaatgccTAGAACTTGACTCTGAATACActtacacataaataaatacatttccatatcTCAGACACAACAAATAATCATCCTTATACAAATCTAGAAAAAAATACTCTTAACATGAAGCTGGTAACAATGGAGTGGGAGACAAGTAGTACAGTAGGCCAGATCCGAGAGTCATGCCAGGAAATGGACTTGAAAACTGGGTAAATGGATTGGTTGACTCAGCAGAAGGATATGTACAGGATATATACAGGTTGCTTCGGTAAAGTTCACAGGaaattacaacatttttattacaggAAGTGTGATCAGGACAGAACTGGACAAACTGAAAGAAGAGCAGTGGGGGCCTTAGTCGGCATTGTCAGCCGTTTCTGACACCACTTCCTATGGCGTCTTTCACTAGGACACTCTGTGCCTCCGATATGCCACAGCTGGTCAACGACTGACATGGGAGTAAAGACCAGCAGTTTGAAGTCAATGTCATTGATTTTGGGAAATTGatggaaaatatttttcctacatttgttttccaacatAAGTTTGCAGCCGTGAAAGCGGGACTGATTGTTTCTATTGTACATGTGCAGTAAACACTCCTAGAAGCTCCAAATAATCCAAAAGGGTAACATTCCAGAAAACACAGGACAATCTCAGCAACTGGAAAATGCAGACACCCCCAATGTCCCCACTATCCtctagaacatttaaaaacaaacaagtcaacaaaaaaaatctattcttttcaaaacaaacttgACTCATAAATATGTTAACCCTGTATCTCAAAAAGATCCCTTTTGAATTGAccccccccca

Function

GO: NA

KEGG:

id description
ko04015 Rap1 signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120332 lncRNA upstream 109694 5755083 ~ 5755350 (+) True G96513
TU120329 lncRNA upstream 111789 5752168 ~ 5753255 (+) True G96512
TU120221 lncRNA upstream 399610 5432605 ~ 5465434 (+) False G96420
TU120226 lncRNA upstream 405996 5457833 ~ 5459048 (+) True G96424
TU120178 lncRNA upstream 670865 5193972 ~ 5194179 (+) True G96384
TU120401 lncRNA downstream 106222 6025345 ~ 6067602 (+) True G96568
TU120405 lncRNA downstream 132275 6051398 ~ 6064774 (+) True G96572
TU120426 lncRNA downstream 198492 6117615 ~ 6118160 (+) True G96591
TU120528 lncRNA downstream 352214 6271337 ~ 6273388 (+) True G96668
TU120531 lncRNA downstream 356245 6275368 ~ 6275601 (+) True G96671
AMCG00015245 mRNA upstream 54115 5798493 ~ 5810929 (+) True AMCG00015245
AMCG00015246 mRNA upstream 76673 5772857 ~ 5788371 (+) True AMCG00015246
AMCG00015242 mRNA upstream 143379 5713705 ~ 5721665 (+) True AMCG00015242
AMCG00015235 mRNA upstream 182398 5681003 ~ 5682646 (+) True AMCG00015235
AMCG00015234 mRNA upstream 261689 5597046 ~ 5603355 (+) True AMCG00015234
AMCG00015252 mRNA downstream 40559 5959682 ~ 5972115 (+) True AMCG00015252
AMCG00015255 mRNA downstream 86184 6005307 ~ 6018242 (+) True AMCG00015255
AMCG00015253 mRNA downstream 108702 6027825 ~ 6035491 (+) True AMCG00015253
AMCG00015254 mRNA downstream 120385 6039508 ~ 6046676 (+) True AMCG00015254
AMCG00015262 mRNA downstream 225688 6144811 ~ 6157310 (+) True AMCG00015262
TU120220 other upstream 400927 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 431022 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 473321 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 842992 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 985148 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 1078510 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 1078510 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 1496246 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 2031687 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 2155058 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile