RNA id: TU120401


Basic Information

Item Value
RNA id TU120401
length 1480
lncRNA type read_through
GC content 0.38
exon number 3
gene id G96568
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6025345 ~ 6067602 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttttttttttttttttttttttttTTGGGCATGACACTTCGTTCGTCTTTATTGGACATTCATTTCtcattataaacaaaattaattgctGAGTTCATAAATTTGAAACCATTAGAAAGGGAGAATCCTGGTCAATATCCAGTGTGGCTGGGAGAGGGTGGGGCCTGAGAGAAAGACCCCTCCCTGACAGAACAGCTTCCAATGGAAAGAGCTGATTCTATTTGCGCCCCACCCTCCATACCAAACCCCACCACCGTTCCCATCTTTGTCCCTGTGGCGACAGCGAATCAGAATCAGTCCGGTTGGATTTAGCTCATTTGCCAGCTTTTCTGTGATgggcagaaagagagaaagagtgatgaaaaaaaaatacataattacccTCCATTCCAAAATGATACTTGCCACAATTAAACACATAGCTTACTTCCCTCCACCACTCCATCGCCTTGTACAAATAGAGAAATTGTTGAATTTCTTTCCATCGTACTTCCTGTATGATCATCGGTGTGTGGATGAGACCCTGCATGAAGCAGTAAACCAAGCCACCTGACaatggtgtttgtgtctgctccatTATGTGTTTGGTATTGTGTTCCAATTGTACTACGTCAATACTTCTTCTTGTTGTATACggtatatttaaatgcattttttcaggTCTATTAACTATTTCCTAATCATATTCAACATCTTTCTAAACTCTCTTGATgttgctgtctgtctctcttcctcacttactcacactcacacatatttacaagcaatataaaaaatataaaaaaattgaGGTATCATTTTAGGAAAAAATATTCAAGAACACAGGAACTCAGGAACTAGGAAATCAATACTTACTTCCCACCCCATTTGCACGAGTCCCCAAAAAAGAACCACTActccacaaacaaaaaatataacaaagaaGACCAATCCACCGATGCGCAGCCTATCCCAGTCTAGGGAGAgaagaatagaaaataaacacacagttgGGAACCTCTCTGGGCAAAACACAGGACCCCATGTGGTAGAGAGTAGTTAATAAATCAATAGATCAATGAAGACATGAACTAATGTTTCAGTTAATAAATACTACTGttacaacaactactactactactactactgctaataataataataataataataataataataagtgtatgttttcaatttgattAATGTCTTCTATTTTGTTACCTTGGGACAGATTAGGCATGGATTTCTTTCAAGGTTAAAGAATACCCCGTTTTGTGGGACAGGGGGGACAGTGCATCCTATGGCCACCCTACCTCTATCATGCTAGGTGCAGTAGAAGAGTTGTCTTACCATACGTAAAAGCATCTGAATAGGGGGAGAAtggggagggagaaaaagaaaagagaacatTTAGCAGCTGGACAGCACACAAAATAATCTTCTCATTGGGCTTTGACACAGTGGTCTCTAATGCTGGTCCTGGAGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120367 lncRNA upstream 106222 5865044 ~ 5919123 (+) True G96543
TU120332 lncRNA upstream 269995 5755083 ~ 5755350 (+) True G96513
TU120329 lncRNA upstream 272090 5752168 ~ 5753255 (+) True G96512
TU120221 lncRNA upstream 559911 5432605 ~ 5465434 (+) False G96420
TU120226 lncRNA upstream 566297 5457833 ~ 5459048 (+) True G96424
TU120426 lncRNA downstream 50013 6117615 ~ 6118160 (+) True G96591
TU120528 lncRNA downstream 203735 6271337 ~ 6273388 (+) True G96668
TU120531 lncRNA downstream 207766 6275368 ~ 6275601 (+) True G96671
TU120568 lncRNA downstream 311169 6378771 ~ 6385567 (+) True G96697
TU120586 lncRNA downstream 361987 6429589 ~ 6431235 (+) True G96710
AMCG00015255 mRNA upstream 7103 6005307 ~ 6018242 (+) True AMCG00015255
AMCG00015252 mRNA upstream 53230 5959682 ~ 5972115 (+) True AMCG00015252
AMCG00015245 mRNA upstream 214416 5798493 ~ 5810929 (+) True AMCG00015245
AMCG00015246 mRNA upstream 236974 5772857 ~ 5788371 (+) True AMCG00015246
AMCG00015242 mRNA upstream 303680 5713705 ~ 5721665 (+) True AMCG00015242
AMCG00015262 mRNA downstream 77209 6144811 ~ 6157310 (+) True AMCG00015262
AMCG00015264 mRNA downstream 181560 6249162 ~ 6257319 (+) True AMCG00015264
AMCG00015265 mRNA downstream 219983 6287585 ~ 6297209 (+) True AMCG00015265
AMCG00015263 mRNA downstream 235681 6303283 ~ 6309661 (+) True AMCG00015263
AMCG00015268 mRNA downstream 243364 6310966 ~ 6312632 (+) True AMCG00015268
TU120220 other upstream 561228 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 591323 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 633622 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1003293 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1145449 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 930031 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 930031 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 1347767 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1883208 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 2006579 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile