RNA id: TU120451


Basic Information

Item Value
RNA id TU120451
length 1119
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G96609
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5927459 ~ 6032127 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGaagacaatttaaaataaacacacaaactctGACACATTTTCtcctaatatatttatttgtaaaatcgCAACATTTGGTATTTCCAGTAATGCATGGATGTACTTctatttgtacatatttttttttgcttgtagTTGACATTAGTAAAGCTGGAGttcacagaaagaaaggcaggcaatatttgtatatttaccaTATACAGATTATAGTGTAGTGAGCAGAGGGTAGTGCAGTGATCTCGAGCCTcgctaagaggcctgggcctttcACTGATGCGGTGAGATCTCTGCACTGTGGTGTAGGAgcacagaagacaaaggagaagGTTTCCCAACAGTCAGCCTGGCAGAAAGAATTGGTCAAGACATCTCTACTCTTCACTTGGGTCTTTTTATCTGTTTTCCACATTGCTTGGCTTCTAAAGCTGCTAGATGCCATTATACTAAGGGGTCTAGATGTGCTCTGGTGGCTGGTCAGGACAGGCAGGTTTGATCCATTGGGGTCTGTATTCTGCCCTGCTTGAATGACTTCAACTTGCTTGTACTGTTACTACATGCTGCATGCTTCCAACactgtttaattgtgttgtGATGTGTTAAATTGTACTGTGTccaattgcattgtattgtgcAGCTTTGCATGgagttgtgttgtattgtactctagtatttgcactgtatttaaCACTTGTGTTGCTTTGCAGTTCTATTAATAGGACTGTGGAATATCGCTCTGTTTTGTAATGGACTGTGCTGTGGGGATCTCTGCATTGTTTTTTCACTTGTATTCTCTACCTGCTGTTGCGAGAAGCAAAATCAGTGTTTTGTGTCATCTGGaatagacacatttaaaaaataaagtaataattaagAGAAAAGAACAGATCTGTATCTAAACATAATTACTTTGGAGATTCCAATAATTATACAAACATGAAGAATATTAATGATTAAACAACAATCTCTTGCAATAAGGAACACTTGTGGCAAGCACACCATTTGACAAACAAGAGGAGATATatagggagagagggggaggaggaggaggggtgtgtgtgttagaaCAGTACTacagcactatatatatatatatatatatatatatatatatatttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120354 lncRNA downstream 144809 5792403 ~ 5792614 (-) True G96532
TU120352 lncRNA downstream 148576 5786397 ~ 5788847 (-) True G96531
TU120290 lncRNA downstream 379918 5557251 ~ 5557505 (-) True G96479
TU120271 lncRNA downstream 472099 5432605 ~ 5465324 (-) True G96462
TU120268 lncRNA downstream 472756 5427736 ~ 5464667 (-) True G96459
TU120469 lncRNA upstream 53198 6025368 ~ 6072079 (-) False AMCG00015257
TU120468 lncRNA upstream 92795 6064965 ~ 6072079 (-) False AMCG00015257
TU120496 lncRNA upstream 146451 6118621 ~ 6119653 (-) True G96642
TU120497 lncRNA upstream 148484 6120654 ~ 6121002 (-) True G96643
TU120510 lncRNA upstream 184933 6157103 ~ 6223629 (-) True G96650
AMCG00015251 mRNA downstream 23486 5900594 ~ 5913937 (-) True AMCG00015251
AMCG00015247 mRNA downstream 57233 5865044 ~ 5880190 (-) True AMCG00015247
AMCG00015250 mRNA downstream 87994 5845176 ~ 5849429 (-) True AMCG00015250
AMCG00015248 mRNA downstream 94151 5828748 ~ 5843272 (-) True AMCG00015248
AMCG00015249 mRNA downstream 111187 5810034 ~ 5826236 (-) True AMCG00015249
AMCG00015258 mRNA upstream 3041 5975211 ~ 6008244 (-) True AMCG00015258
AMCG00015256 mRNA upstream 77354 6049524 ~ 6064059 (-) True AMCG00015256
AMCG00015257 mRNA upstream 92799 6064969 ~ 6072125 (-) True AMCG00015257
AMCG00015260 mRNA upstream 106053 6078223 ~ 6083491 (-) True AMCG00015260
AMCG00015259 mRNA upstream 112707 6084877 ~ 6097018 (-) True AMCG00015259
TU120336 other downstream 180314 5755654 ~ 5757109 (-) False AMCG00015244
TU120133 other downstream 863617 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 931911 4985572 ~ 5005512 (-) False AMCG00015211
TU120487 other upstream 77307 6049477 ~ 6064159 (-) False AMCG00015256
TU120625 other upstream 405720 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 726687 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 945596 6917766 ~ 6921641 (-) False AMCG00015288
TU121101 other upstream 1813917 7786087 ~ 7786442 (-) True G97125

Expression Profile