RNA id: TU120496


Basic Information

Item Value
RNA id TU120496
length 1033
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G96642
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6118621 ~ 6119653 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgccttcctggatgaactcatccaagaagatttcatttgtgaacgttgttggCATGTTGAAGTCTTAGAGATCAaatctgtgatcttgaggctcaacttgttgatctgcgctgtattagagATATAGAGGAATttgtcaatcagcccatgagagagatNNNNNNNNNNCctaaacctaggagagttgagagcaggaaagtgtagagaactgctgggttacagttaggtcgtaaccgcagaaaagggaaGTAGTtctagtaggagactcaatccTTGGAGgtatagatcacacagtgtgttctagtgataaggagacctgcaagatatcttgcctgcctggtgctcaggttgtaNNNNNNNNNNaactagtagatgggctactggccaaagccagggggaatcccctggtcatggtccacattggaaccaatgacataggaaaatgaaggacagaggttctgctaGACAAAGACTAGGAACAAGGTCAGGATGTGGACATAACAGATGTGGCtattataatgggggatttcaatttcccaaacaatGAGTGGGCAAGCCTAGTTGGGACTGCAGAAGTataaatagaaatggttgagatggtaaacaACTGCTTTCTTACTCAATTCGTCAAGGAAACAACCAGaaagagagcatgcattgacttgatcttttcaaatggccaagatagagtcagatgGACACTaattagagaaccaatggcaaactgtgatcaccaTATGATTAGCTTTGAGGCTACTTAGCCTGGAGtgcactggatacagattcagttgaaaNNNNNNNNNNatattttaagaatattctaCTTGGGGCTCAGGAGAAATGtataccaaaacttagcaaattgaggaccaaaNNNNNNNNNNcaaaatggtttaatagaagtatgcaaaacatagctaaagaaagaaaatgctgtatagcacatacaaaagggatataGACTAAACCAAATACAatgaatatgttgaactgcaaagagatcttaagaaaggaatcaggaaagcaaatagGG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120469 lncRNA downstream 46542 6025368 ~ 6072079 (-) False AMCG00015257
TU120468 lncRNA downstream 46542 6064965 ~ 6072079 (-) False AMCG00015257
TU120450 lncRNA downstream 86494 5927459 ~ 6032127 (-) False G96609
TU120451 lncRNA downstream 146451 5937423 ~ 5972170 (-) True G96609
TU120354 lncRNA downstream 326007 5792403 ~ 5792614 (-) True G96532
TU120497 lncRNA upstream 1001 6120654 ~ 6121002 (-) True G96643
TU120510 lncRNA upstream 37450 6157103 ~ 6223629 (-) True G96650
TU120513 lncRNA upstream 108861 6228514 ~ 6228776 (-) True G96653
TU120566 lncRNA upstream 235367 6355020 ~ 6362409 (-) True G96696
TU120631 lncRNA upstream 290994 6410647 ~ 6412709 (-) True AMCG00015271
AMCG00015259 mRNA downstream 21603 6084877 ~ 6097018 (-) True AMCG00015259
AMCG00015260 mRNA downstream 35130 6078223 ~ 6083491 (-) True AMCG00015260
AMCG00015257 mRNA downstream 46496 6064969 ~ 6072125 (-) True AMCG00015257
AMCG00015256 mRNA downstream 54562 6049524 ~ 6064059 (-) True AMCG00015256
AMCG00015258 mRNA downstream 110377 5975211 ~ 6008244 (-) True AMCG00015258
AMCG00015261 mRNA upstream 4447 6124100 ~ 6144724 (-) True AMCG00015261
AMCG00015267 mRNA upstream 249101 6368754 ~ 6382439 (-) False AMCG00015267
AMCG00015271 mRNA upstream 291002 6410655 ~ 6419481 (-) False AMCG00015271
AMCG00015270 mRNA upstream 310965 6430618 ~ 6440642 (-) True AMCG00015270
AMCG00015272 mRNA upstream 368789 6488442 ~ 6501219 (-) True AMCG00015272
TU120487 other downstream 54462 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 361512 5755654 ~ 5757109 (-) False AMCG00015244
TU120133 other downstream 1044815 5054901 ~ 5073806 (-) False AMCG00015211
TU120090 other downstream 1113109 4985572 ~ 5005512 (-) False AMCG00015211
TU120625 other upstream 258237 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 579204 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 798113 6917766 ~ 6921641 (-) False AMCG00015288
TU121101 other upstream 1666434 7786087 ~ 7786442 (-) True G97125
TU121448 other upstream 2011654 8131307 ~ 8134115 (-) False G97411

Expression Profile