RNA id: TU120497


Basic Information

Item Value
RNA id TU120497
length 349
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G96643
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6120654 ~ 6121002 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NtttgaagacttgaatcaagtccccacatagtttcctctgttccagggtgaaaagattcagttccctcagtctctccgagtgggacattcccttcagacctggaataagtctggttgccaagaactgtacacagtatccagatgagctctaactaatgcattgtacagtcttaacattactgcccttgttttaaattctacacNNNNNNNNNNataccctaacattctgtttgacttttttattgcttccccacattgttagGAGTCTACATAGACTCCTAAGTCTTTCTcgtgcgttacttcatctagttctattcctcctatagtgtaattataatggacatttttg

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120496 lncRNA downstream 1001 6118621 ~ 6119653 (-) True G96642
TU120469 lncRNA downstream 48575 6025368 ~ 6072079 (-) False AMCG00015257
TU120468 lncRNA downstream 48575 6064965 ~ 6072079 (-) False AMCG00015257
TU120450 lncRNA downstream 88527 5927459 ~ 6032127 (-) False G96609
TU120451 lncRNA downstream 148484 5937423 ~ 5972170 (-) True G96609
TU120510 lncRNA upstream 36101 6157103 ~ 6223629 (-) True G96650
TU120513 lncRNA upstream 107512 6228514 ~ 6228776 (-) True G96653
TU120566 lncRNA upstream 234018 6355020 ~ 6362409 (-) True G96696
TU120631 lncRNA upstream 289645 6410647 ~ 6412709 (-) True AMCG00015271
TU120734 lncRNA upstream 749460 6870462 ~ 6871498 (-) True AMCG00015283
AMCG00015259 mRNA downstream 23636 6084877 ~ 6097018 (-) True AMCG00015259
AMCG00015260 mRNA downstream 37163 6078223 ~ 6083491 (-) True AMCG00015260
AMCG00015257 mRNA downstream 48529 6064969 ~ 6072125 (-) True AMCG00015257
AMCG00015256 mRNA downstream 56595 6049524 ~ 6064059 (-) True AMCG00015256
AMCG00015258 mRNA downstream 112410 5975211 ~ 6008244 (-) True AMCG00015258
AMCG00015261 mRNA upstream 3098 6124100 ~ 6144724 (-) True AMCG00015261
AMCG00015267 mRNA upstream 247752 6368754 ~ 6382439 (-) False AMCG00015267
AMCG00015271 mRNA upstream 289653 6410655 ~ 6419481 (-) False AMCG00015271
AMCG00015270 mRNA upstream 309616 6430618 ~ 6440642 (-) True AMCG00015270
AMCG00015272 mRNA upstream 367440 6488442 ~ 6501219 (-) True AMCG00015272
TU120487 other downstream 56495 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 363545 5755654 ~ 5757109 (-) False AMCG00015244
TU120133 other downstream 1046848 5054901 ~ 5073806 (-) False AMCG00015211
TU120090 other downstream 1115142 4985572 ~ 5005512 (-) False AMCG00015211
TU120625 other upstream 256888 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 577855 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 796764 6917766 ~ 6921641 (-) False AMCG00015288
TU121101 other upstream 1665085 7786087 ~ 7786442 (-) True G97125
TU121448 other upstream 2010305 8131307 ~ 8134115 (-) False G97411

Expression Profile