RNA id: TU120568



Basic Information


Item Value
RNA id TU120568
length 345
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G96697
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6378771 ~ 6385567 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCTCCTATGCCCCCCGCAGTGCAGTAGGAGCGTCTCTCACCTCCGCTGGCTATGGCCACAATCCTCCTGACGGTTTGATTGACCACAGGGTTGCTCAGCTGGAAGGTGTAGCTCTGATTGGCCAGTTGTTCCACTGTCAGACGGCTGCACAGCTCCAGCAACCCTCCCCTGCTCTCCCATTGGCTGGTGTGGCTGCGCTCCGTGATGTCACCTCCAGATTGGTTCAGCCAGAGCACAGTGGCCTGCGGGTATCCCTGAGCACAGTACTCCAGCATGAGGAGGCCAGGATGCTTAGACATGCTGATCACTAAACAAGGCTCTTCGTATTCCGCTTCTACAAGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120531 lncRNA upstream 103170 6275368 ~ 6275601 (+) True G96671
TU120528 lncRNA upstream 105383 6271337 ~ 6273388 (+) True G96668
TU120426 lncRNA upstream 260611 6117615 ~ 6118160 (+) True G96591
TU120401 lncRNA upstream 311169 6025345 ~ 6067602 (+) True G96568
TU120405 lncRNA upstream 313997 6051398 ~ 6064774 (+) True G96572
TU120586 lncRNA downstream 44022 6429589 ~ 6431235 (+) True G96710
TU120595 lncRNA downstream 70265 6455832 ~ 6490523 (+) False G96716
TU120593 lncRNA downstream 102701 6488268 ~ 6490523 (+) True G96716
TU120620 lncRNA downstream 304622 6690189 ~ 6691799 (+) True AMCG00015277
TU120661 lncRNA downstream 316045 6701612 ~ 6703094 (+) False G96767
AMCG00015266 mRNA upstream 33853 6343797 ~ 6344918 (+) True AMCG00015266
AMCG00015268 mRNA upstream 66139 6310966 ~ 6312632 (+) True AMCG00015268
AMCG00015263 mRNA upstream 69110 6303283 ~ 6309661 (+) True AMCG00015263
AMCG00015265 mRNA upstream 81562 6287585 ~ 6297209 (+) True AMCG00015265
AMCG00015264 mRNA upstream 121452 6249162 ~ 6257319 (+) True AMCG00015264
AMCG00015269 mRNA downstream 99 6385666 ~ 6389631 (+) True AMCG00015269
AMCG00015277 mRNA downstream 300784 6686351 ~ 6691259 (+) False AMCG00015277
AMCG00015276 mRNA downstream 330173 6715740 ~ 6729138 (+) True AMCG00015276
AMCG00015280 mRNA downstream 415390 6800957 ~ 6802081 (+) True AMCG00015280
AMCG00015281 mRNA downstream 419089 6804656 ~ 6805912 (+) True AMCG00015281
TU120220 other upstream 914654 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 944749 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 987048 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1356719 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1498875 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 612066 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 612066 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 1029802 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1565243 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1688614 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile