RNA id: TU120586


Basic Information

Item Value
RNA id TU120586
length 804
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G96710
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6429589 ~ 6431235 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttttttttccttttttttttttgttaaatagtaataaatacatgagatgcagtggttgtttttttttcgttttttttctctgaagcaGGAGGGttaaaaagttttttcttttatttatttattttttgtctcgtttgtttgtctgtttgtttagcAGCAATCCTAAGACGTTTgaaaaaccaaataaaaagaatagtagtaacaataaaatatactaaaataataaaccaaggggtagaggagaaaaaaatcccATGGTGTGTGTTCCGTttgccaccccccccccccacaacaaaataaaaaaatatcaaaaacaaccaaaaaaaacccaCTGCTTGCTTTCTCTGATTTCTCCCACACGCAGGCCTCACACCCTCATGTAgtgattattaataaattaacaatttacaatttaacacCTAGacttcagaaacaaaaaataaaaataaacagggtctttcctttcctctctctttttcttacTCCCTCTCTCTATTCTCTGCCAAAACCTTgaaactgaaaaaaaacaaaaaagaaatggaaaagaaaaaaattcaaCCCCCCCAGATCCCTCCCCAACCCGCcccatgcaaaacaaaatcgTCCTTTGATAtttcatgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtgtctgcgtgtgtcttgtcattttaaaatcgTATGGCTTTTTGAGTTTGTTCAAGATTCATCAAGAGTTTGCTGCTGTGCTCTGAGTGGCTCCTCCACTACTGCAGACGCCAAGCATCGCCGACTCCTCCGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120568 lncRNA upstream 44022 6378771 ~ 6385567 (+) True G96697
TU120531 lncRNA upstream 153988 6275368 ~ 6275601 (+) True G96671
TU120528 lncRNA upstream 156201 6271337 ~ 6273388 (+) True G96668
TU120426 lncRNA upstream 311429 6117615 ~ 6118160 (+) True G96591
TU120401 lncRNA upstream 361987 6025345 ~ 6067602 (+) True G96568
TU120595 lncRNA downstream 24597 6455832 ~ 6490523 (+) False G96716
TU120593 lncRNA downstream 57033 6488268 ~ 6490523 (+) True G96716
TU120620 lncRNA downstream 258954 6690189 ~ 6691799 (+) True AMCG00015277
TU120661 lncRNA downstream 270377 6701612 ~ 6703094 (+) False G96767
TU120662 lncRNA downstream 270377 6701612 ~ 6703094 (+) True G96767
AMCG00015269 mRNA upstream 39958 6385666 ~ 6389631 (+) True AMCG00015269
AMCG00015266 mRNA upstream 84671 6343797 ~ 6344918 (+) True AMCG00015266
AMCG00015268 mRNA upstream 116957 6310966 ~ 6312632 (+) True AMCG00015268
AMCG00015263 mRNA upstream 119928 6303283 ~ 6309661 (+) True AMCG00015263
AMCG00015265 mRNA upstream 132380 6287585 ~ 6297209 (+) True AMCG00015265
AMCG00015277 mRNA downstream 255116 6686351 ~ 6691259 (+) False AMCG00015277
AMCG00015276 mRNA downstream 284505 6715740 ~ 6729138 (+) True AMCG00015276
AMCG00015280 mRNA downstream 369722 6800957 ~ 6802081 (+) True AMCG00015280
AMCG00015281 mRNA downstream 373421 6804656 ~ 6805912 (+) True AMCG00015281
AMCG00015284 mRNA downstream 379632 6810867 ~ 6885373 (+) True AMCG00015284
TU120220 other upstream 965472 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 995567 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 1037866 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1407537 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1549693 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 566398 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 566398 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 984134 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1519575 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1642946 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU355265 True 776 lncRNA 0.37 1 NW_019171672.1 52307 ~ 53082 (-)