RNA id: TU120593


Basic Information

Item Value
RNA id TU120593
length 1346
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G96716
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6455832 ~ 6490523 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTCCATATGCTTTGCATATGGCAGTTATTCTATTGTAAATcccaggggaaaaaacaaatgcactgtATCCATTAGCAACACAATGCTAGAAAACTTTCAACATGAATTCCATTTAGGTCAGAACTCTATAACACAACATCAATCACACCCAGAGggtgtttcatttatttatccatttattgTGTTAGCTCATTTCTTAGCAGCCACTGTGGTCTATGTGCAGAAGACAAAGCCTACAGAAGGAACCAATAATCCTAGGACTTTGTGACAGGACTGAAAGCAGATGCAATTGGTTGTGGAGTTTCCCCTCTTCATTTGGCCCACTTTTTCAACCACCCTGACCCTTTCCTGGCTCTGATGCAGGTGACCTCGAGTGGCCTAAAATCTGAAGGCCCTGTGGCACGGAGGAGTGGATGTGAAGATCACCAATCAGAACTGTCTCAAGAATAACCACCTCATCACATTACTTAGTTtggtaattttaattaaaaaagtaaaccgGAAAGTTACAGCTGTGTGATGACTGAGGTCGAGCTCTTACAATCCTCTTCAGTGATCCAATCACTTGTTTGTGCCAAGACATCACATGGCAATTGGATGAATGTCATTCagaataataacataaaaaagccacACTTAGATCAGTGTCCCACAAGCACTGGCTGTTACATACTAAACCAGTTGAGATTCTCAACTACCTAGTAACcaaagggaagaaaaataaaccaaacaaacaaagatgaaCCTAGATCACAtttcccccacccctccctctttgttttctttctagaaAATCTGGAGTACAAAATTACAAGcaagggagggagaaaaagagggaaaagTTGCATGATGGGGGGTGTTCTGAAGCACGGGTGGAAGGAGTAATAAAGCTTCAGTCTGCCGCTCCGGGAGGGTACGTCCTGTTTGGCTGGGTCTCCTTGTGTTCAGAGATTCAAAGGATGAAAGGGGGGCGCAGTACAGGTCACTGTCCATTCAGTGTGTCTGTTGATCAACACTGTCACTACAGCCCCAGTCCTCAGGGCCTTCACTGGCAGTTTATAAATGGAGATTTGGGGAAAAGttggggagggtgggggagCTGTGCCAAGCTGCAATGTGCCAACCGTCAGTGCCAGTCCAACACTATTTCTTCTGTTTCGGTGTCGGCCTGAAACAGAAGAGAAGGTAAAAATCAGACATTAACCAGGAGTCACAGCTCAGGGAGGTTTATGGTTTAAATTCTGCTGCACTGCAACTCATGGTTTTGACTCACAGTATAAAACAGACTGTTTAATCTCAAGACTGCGGCAACCAGAGGACGTCCACTTACTGCAGCACTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120586 lncRNA upstream 57033 6429589 ~ 6431235 (+) True G96710
TU120568 lncRNA upstream 102701 6378771 ~ 6385567 (+) True G96697
TU120531 lncRNA upstream 212667 6275368 ~ 6275601 (+) True G96671
TU120528 lncRNA upstream 214880 6271337 ~ 6273388 (+) True G96668
TU120426 lncRNA upstream 370108 6117615 ~ 6118160 (+) True G96591
TU120620 lncRNA downstream 199666 6690189 ~ 6691799 (+) True AMCG00015277
TU120661 lncRNA downstream 211089 6701612 ~ 6703094 (+) False G96767
TU120662 lncRNA downstream 211089 6701612 ~ 6703094 (+) True G96767
TU120752 lncRNA downstream 427283 6917806 ~ 6921641 (+) True G96837
TU120852 lncRNA downstream 655428 7145951 ~ 7146204 (+) True G96915
AMCG00015269 mRNA upstream 98637 6385666 ~ 6389631 (+) True AMCG00015269
AMCG00015266 mRNA upstream 143350 6343797 ~ 6344918 (+) True AMCG00015266
AMCG00015268 mRNA upstream 175636 6310966 ~ 6312632 (+) True AMCG00015268
AMCG00015263 mRNA upstream 178607 6303283 ~ 6309661 (+) True AMCG00015263
AMCG00015265 mRNA upstream 191059 6287585 ~ 6297209 (+) True AMCG00015265
AMCG00015277 mRNA downstream 195828 6686351 ~ 6691259 (+) False AMCG00015277
AMCG00015276 mRNA downstream 225217 6715740 ~ 6729138 (+) True AMCG00015276
AMCG00015280 mRNA downstream 310434 6800957 ~ 6802081 (+) True AMCG00015280
AMCG00015281 mRNA downstream 314133 6804656 ~ 6805912 (+) True AMCG00015281
AMCG00015284 mRNA downstream 320344 6810867 ~ 6885373 (+) True AMCG00015284
TU120220 other upstream 1024151 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 1054246 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 1096545 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1466216 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1608372 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 507110 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 507110 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 924846 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1460287 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1583658 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile