RNA id: TU120752



Basic Information


Item Value
RNA id TU120752
length 472
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G96837
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6917806 ~ 6921641 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AACTGAATCTCCTCGACTTTGTTGCGGACCTCTTTGGCAGCTTCAGTCTTGCACCCTGCATGCAGATCTTTGGCCTTGCGGATAATGTTGACCATATCCATAATCAGGGCGATGCCAGCAAGTAAGCCGCCCACCACTGCTGTGACCCTGGCTGCAGCGTTGGCTCCCAAAGCGATGACATCATCAAGCAGACTAACTGCCCGGGCGAGGGAAAAAANNNNTGGTCAGTATGCCCACTCCCCCCGGTAACACCGACATGCCACTGACCTCCTCCTGCAACTGCGACAGTGTCTGGCAGACGGTTTTGATGGACTCCTGTAGATTGCTAAAGTCTATTTCAATGCTCTGTATCTTAGCTTCAAGCTCCTCCTTGTATTGCTTGTTCTTGATGTGTCTCCCAACGTCAGAAGAGATTGACGTGATGCCGCCAGCTACGCCAATTCCCGCCCCGACCCCGCTGATTATTAACGAN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120661 lncRNA upstream 214712 6701612 ~ 6703094 (+) False G96767
TU120662 lncRNA upstream 214712 6701612 ~ 6703094 (+) True G96767
TU120620 lncRNA upstream 226007 6690189 ~ 6691799 (+) True AMCG00015277
TU120595 lncRNA upstream 427283 6455832 ~ 6490523 (+) False G96716
TU120593 lncRNA upstream 427283 6488268 ~ 6490523 (+) True G96716
TU120852 lncRNA downstream 224310 7145951 ~ 7146204 (+) True G96915
TU120877 lncRNA downstream 294999 7216640 ~ 7225338 (+) True G96936
TU120942 lncRNA downstream 442742 7364383 ~ 7364984 (+) True G96992
TU121030 lncRNA downstream 711740 7633381 ~ 7649307 (+) True G97059
TU121042 lncRNA downstream 732483 7654124 ~ 7654649 (+) True G97071
AMCG00015284 mRNA upstream 32433 6810867 ~ 6885373 (+) True AMCG00015284
AMCG00015281 mRNA upstream 111894 6804656 ~ 6805912 (+) True AMCG00015281
AMCG00015280 mRNA upstream 115725 6800957 ~ 6802081 (+) True AMCG00015280
AMCG00015276 mRNA upstream 188668 6715740 ~ 6729138 (+) True AMCG00015276
AMCG00015277 mRNA upstream 226547 6686351 ~ 6691259 (+) False AMCG00015277
AMCG00015289 mRNA downstream 69462 6991103 ~ 6996754 (+) True AMCG00015289
AMCG00015293 mRNA downstream 75956 6997597 ~ 6999583 (+) False AMCG00015293
AMCG00015291 mRNA downstream 95855 7017496 ~ 7025046 (+) True AMCG00015291
AMCG00015292 mRNA downstream 111387 7033028 ~ 7041181 (+) True AMCG00015292
AMCG00015290 mRNA downstream 140261 7061902 ~ 7079471 (+) True AMCG00015290
TU120220 other upstream 1453689 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 1483784 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 1526083 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1895754 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 2037910 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 75992 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 75992 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 493728 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1029169 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1152540 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile