RNA id: TU121101


Basic Information

Item Value
RNA id TU121101
length 356
RNA type TUCP
GC content 0.52
exon number 1
gene id G97125
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7786087 ~ 7786442 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGACTGGAACTgcgtctctctgcctctcagtctctcagtgaaATGGCAGAAGCTGGATTTTTCCTGGACCAGATCAGCTGCTCAGTGTGTCTGGACACACTGAAGGATCCAGTGACTATTCCCTGTGGACACAGTTACTGTCTGGGCTGTATTAAGAGCTGCTGGGACCAGGATGATAATATCGGTATCTACAGCTGCCCCCAGTGCAGAAACACCTTCACCCCGAGGCCTGTTCTCTGCAGAAACACCATGTTTGCTGAAGTGGTGGAGAGACTGAAGAAGACAGGGCTAAAtgcccttcctcctcctcctcctgttcaCAGTCCTGCTGGACCTGGAGATGTGTTGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121097 lncRNA downstream 5489 7780392 ~ 7780598 (-) True G97121
TU121011 lncRNA downstream 166570 7497942 ~ 7619517 (-) True G97041
TU120982 lncRNA downstream 377571 7408002 ~ 7408516 (-) False AMCG00015305
TU120947 lncRNA downstream 421088 7362385 ~ 7364999 (-) True G96994
TU120944 lncRNA downstream 421088 7362490 ~ 7364999 (-) False G96994
TU121106 lncRNA upstream 28452 7814894 ~ 7815402 (-) True G97130
TU121110 lncRNA upstream 33362 7819804 ~ 7820189 (-) True G97134
TU121210 lncRNA upstream 183155 7969597 ~ 7970757 (-) True G97221
TU121240 lncRNA upstream 215044 8001486 ~ 8016073 (-) True G97244
TU121429 lncRNA upstream 282338 8068780 ~ 8069037 (-) True G97395
AMCG00015314 mRNA downstream 28868 7748342 ~ 7757219 (-) True AMCG00015314
AMCG00015313 mRNA downstream 75819 7707910 ~ 7710268 (-) True AMCG00015313
AMCG00015305 mRNA downstream 337793 7390889 ~ 7448294 (-) True AMCG00015305
AMCG00015304 mRNA downstream 396527 7386859 ~ 7389560 (-) True AMCG00015304
AMCG00015303 mRNA downstream 488502 7294862 ~ 7297585 (-) True AMCG00015303
AMCG00015320 mRNA upstream 34752 7821194 ~ 7825760 (-) True AMCG00015320
AMCG00015321 mRNA upstream 40239 7826681 ~ 7828114 (-) True AMCG00015321
AMCG00015318 mRNA upstream 46876 7833318 ~ 7834220 (-) True AMCG00015318
AMCG00015319 mRNA upstream 70637 7857079 ~ 7861747 (-) True AMCG00015319
AMCG00015329 mRNA upstream 90992 7877434 ~ 7885936 (-) True AMCG00015329
TU120782 other downstream 864446 6917766 ~ 6921641 (-) False AMCG00015288
TU120659 other downstream 1085730 6698857 ~ 6700357 (-) True G96766
TU120625 other downstream 1401467 6377890 ~ 6384620 (-) True AMCG00015267
TU120487 other downstream 1721928 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 2028978 5755654 ~ 5757109 (-) False AMCG00015244
TU121448 other upstream 344865 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 623545 8409987 ~ 8411882 (-) True G97455
TU121587 other upstream 754746 8541188 ~ 8543180 (-) False AMCG00015374
TU121599 other upstream 793857 8580299 ~ 8581101 (-) False AMCG00015372
TU121952 other upstream 1005666 8792108 ~ 8794774 (-) False AMCG00015393

Expression Profile