RNA id: TU121109



Basic Information


Item Value
RNA id TU121109
length 513
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G97133
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7819675 ~ 7820187 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAAAACATGTCAACCATGCTATTATTGGCACCACACCTGAGAAAATAAGATAGACCATAAAACTAACACTATTACACATTCATGAACTCAAATACCTCTAACAGAAGTGCATGACAGATGAGCTCCAGTCAGCTGTTGCACCCTAAATGAAAAGGACTGGACCAACCGATGTGATTCTGATGCGACTGGAACAGAAAATGTGGATCAGCAAGTCTGGAGTGTCAATCTCAGATAGACAGTGACTTTGACATATCTGTGAAAAACAGGCTTCCATCTGTTGTTTAATTCAGTCCAGATGCAAGGGAGACATGCTTCTGCAAACTGACAAAGCTACTGAAGCTACAGACCCAGGACaagaaatacaacaaagaaaTTGTACTGCAAATAGTTTATTTCCAGATTATTAACAacaaccattaaaaaaatgtcaaaacaaaacaaaaacctgaccCACAAGTTgcctttaaattaaagttttttggggggagtgGTGACCGTGTGTGAAGGCCGGTN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121096 lncRNA upstream 46198 7773273 ~ 7773477 (+) True G97120
TU121094 lncRNA upstream 46621 7772789 ~ 7773054 (+) True G97118
TU121043 lncRNA upstream 162393 7656976 ~ 7657282 (+) True G97072
TU121042 lncRNA upstream 165026 7654124 ~ 7654649 (+) True G97071
TU121030 lncRNA upstream 170368 7633381 ~ 7649307 (+) True G97059
TU121128 lncRNA downstream 57253 7877440 ~ 7878313 (+) True G97152
TU121133 lncRNA downstream 68422 7888609 ~ 7892787 (+) True G97157
TU121137 lncRNA downstream 76018 7896205 ~ 7897377 (+) True G97160
TU121153 lncRNA downstream 100218 7920405 ~ 7931022 (+) True G97172
TU121164 lncRNA downstream 126021 7946208 ~ 7950674 (+) False AMCG00015324
AMCG00015317 mRNA upstream 24720 7784533 ~ 7794955 (+) True AMCG00015317
AMCG00015312 mRNA upstream 51201 7759071 ~ 7768474 (+) True AMCG00015312
AMCG00015310 mRNA upstream 69091 7735343 ~ 7750584 (+) True AMCG00015310
AMCG00015315 mRNA upstream 86478 7732409 ~ 7733197 (+) True AMCG00015315
AMCG00015311 mRNA upstream 111628 7698847 ~ 7708047 (+) True AMCG00015311
AMCG00015322 mRNA downstream 10410 7830597 ~ 7835163 (+) True AMCG00015322
AMCG00015316 mRNA downstream 25405 7845592 ~ 7849003 (+) True AMCG00015316
AMCG00015323 mRNA downstream 80934 7901121 ~ 7901720 (+) True AMCG00015323
AMCG00015324 mRNA downstream 130376 7950563 ~ 7956114 (+) True AMCG00015324
AMCG00015325 mRNA downstream 144460 7964647 ~ 7970683 (+) True AMCG00015325
TU120961 other upstream 403913 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 738887 6997633 ~ 7080788 (+) True AMCG00015293
TU120766 other upstream 820092 6997633 ~ 6999583 (+) False AMCG00015293
TU120220 other upstream 2355558 5426879 ~ 5464117 (+) False G96420
TU121162 other downstream 130623 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 253994 8074181 ~ 8078761 (+) True AMCG00015334
TU121298 other downstream 304421 8124608 ~ 8126457 (+) True AMCG00015343
TU121352 other downstream 413237 8233424 ~ 8294330 (+) True G97343
TU121351 other downstream 468783 8288970 ~ 8293527 (+) False AMCG00015356

Expression Profile