RNA id: TU121137



Basic Information


Item Value
RNA id TU121137
length 797
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G97160
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7896205 ~ 7897377 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTACCTCTCTATGAGCATGGCCTGGCGCTGCGGGGGGATCTGGAAGAGCAGCTGATTGGCCAGTTTGCTGGGGCAGTGCAACAGCCTCTCGGCCATCTGGAAGGTGCGGTAGTGGTCCGTAGTGTCGCTCTCCAGCACCGCCTGGCACGCCCCCCACTGCTCCAGGATCCCAGAGCGCACCCGCATGGACACCGCGTCCGTCACTGGGGGAGAGGGACACATGCAGCGAGACAGAAcctcagagagagggagagaagacaggcactgacacacaacctcagagagagggagggagtgggacAGTCAcctgtgacacacacagagagagagagagagagacggagcgGGACAGTCACCTGTGTACCCATCCAGCCAGAGCTGATACACCTCCTCGTCCATGATGGTTGTGTTCCCCACAAACACGTCCAGCTCCATCGCCATGCGCAGCgcTTGTCTGCGGAATCGGGTGCCGAATAAGCCATTTCAAAGCCGCAAAAAACAGCGTAGCTACTCAGTAACACTAAGGAAAAGCTCAgactaatgtttatttatggggagggggggtccAGGTAAAAACACGAGTGGGTCATCGGACATCTGAGAGAGGTCGCTGTGGTTAAACAACAGACACATACCCTGTGGTCAGTGTGTAGTGAGACTGTTTCAAAATCCgactaaaatatgttttaaaagtaacccaTCCCTGCACGGCTCTGGCTGCCTGTCTCCTCTCGCTGTTCTCGCTCGGCGCGACGCTGTAATGTTATTGTCGGCGGCGTTGCAGCAACATCCGTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121133 lncRNA upstream 3418 7888609 ~ 7892787 (+) True G97157
TU121128 lncRNA upstream 17892 7877440 ~ 7878313 (+) True G97152
TU121109 lncRNA upstream 76018 7819675 ~ 7820187 (+) True G97133
TU121096 lncRNA upstream 122728 7773273 ~ 7773477 (+) True G97120
TU121094 lncRNA upstream 123151 7772789 ~ 7773054 (+) True G97118
TU121153 lncRNA downstream 23028 7920405 ~ 7931022 (+) True G97172
TU121164 lncRNA downstream 48831 7946208 ~ 7950674 (+) False AMCG00015324
TU121165 lncRNA downstream 61278 7958655 ~ 7962088 (+) True G97184
TU121190 lncRNA downstream 154146 8051523 ~ 8054827 (+) True G97206
TU121272 lncRNA downstream 193718 8091095 ~ 8101765 (+) True G97271
AMCG00015316 mRNA upstream 47202 7845592 ~ 7849003 (+) True AMCG00015316
AMCG00015322 mRNA upstream 61042 7830597 ~ 7835163 (+) True AMCG00015322
AMCG00015317 mRNA upstream 101250 7784533 ~ 7794955 (+) True AMCG00015317
AMCG00015312 mRNA upstream 127731 7759071 ~ 7768474 (+) True AMCG00015312
AMCG00015310 mRNA upstream 145621 7735343 ~ 7750584 (+) True AMCG00015310
AMCG00015323 mRNA downstream 3744 7901121 ~ 7901720 (+) True AMCG00015323
AMCG00015324 mRNA downstream 53186 7950563 ~ 7956114 (+) True AMCG00015324
AMCG00015325 mRNA downstream 67270 7964647 ~ 7970683 (+) True AMCG00015325
AMCG00015334 mRNA downstream 176931 8074308 ~ 8078832 (+) False AMCG00015334
AMCG00015343 mRNA downstream 226929 8124306 ~ 8124884 (+) False AMCG00015343
TU120961 other upstream 480443 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 815417 6997633 ~ 7080788 (+) True AMCG00015293
TU120766 other upstream 896622 6997633 ~ 6999583 (+) False AMCG00015293
TU120220 other upstream 2432088 5426879 ~ 5464117 (+) False G96420
TU121162 other downstream 53433 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 176804 8074181 ~ 8078761 (+) True AMCG00015334
TU121298 other downstream 227231 8124608 ~ 8126457 (+) True AMCG00015343
TU121352 other downstream 336047 8233424 ~ 8294330 (+) True G97343
TU121351 other downstream 391593 8288970 ~ 8293527 (+) False AMCG00015356

Expression Profile