RNA id: TU121262


Basic Information

Item Value
RNA id TU121262
length 1651
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G97265
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8096386 ~ 8173011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTGCCTTTCACCATTCCCTCCCCCCACAGAGTGAAGGAGTCCAAAGTGTGTGTGGAAATTTTAGTGCTTTATTAGATTTTACCAGACCGTACAAAACACAGGAGTGTatgaaagagaggggggggcagCAATATCCCAAGTCTAACTCCCCATCCCTTCACTGACATGTCTCTTTCCACcacccctcggcctcctcctccacctACTCTCCCTGTAAAGGAATGCTCACTTAAGTAGCccataacatttgaaaaatgtcaaagtggaaaattaaaaaaaaaaaaaaaaaaaatggtctcAATCtattgatattttgtattaccaCTGTTATCCTTCCATCATTGTGAAACCCACTACAGCAGCTGAGAGCTGCTTAGAGctacagcacaaaacaaaaacactaataaaagaaaaaaaattatggaaatgttattttggcaaaataataataataataataaaaaaaaaaaagtattgtttagAATTGAAGCTGTTCCCCTATAACACCCCCTCCCTCATGTCCACTCAGGAATTGTTCACCCAGGTCTAGGTTGGTTCCCCACATTGGATTCAGACAAACTGTAGCCAGGAAAAGCAGGAAGGTGACAGATTCCATTAGaactttaatttttattttttaatttccttcatttgctttagttttttttttttttttttgtgttttttattttttatttaatttatagatTAATTTTTTTTGATGAAACTGAACAGTGTGGAGGATACCATActtttaccccccccccccccccccccccccccccccccccccccccccccacccaaccctACCCTACCCTACCCTTTCTAACCCAGCCTCCCCCACATCTCTCCCCTCTTCTCCCTCGGAATGAACAGTCGGGGCCTGCAGTAAGTGGAGGCCTCGGTGAAGCCTGGGACTACATTTACAAGGGGCTCCCCTCCAGGGTGATAACTGACTGGCCGCCCAGCTTCTCAGCCAGGGTGCGTCGGTCCTTGATGTCCTCCAAACCGTTTACCTGCCACTCGTGCTTGATGcctgGAACTTTTTCTTGATGGCATCCTTGGAGCTGGCGTAGATCATCTTGCTCTTCAGGGGGGCATTCTCGGGGGCCCTGAGATAAGAGACAGACCGTCACTATGAACTCTAATGACATGCTGTGGTATCAGGGACAAGCATCCTGCATAACACCTCCCACCCATGGCTCTCTTCCCaattcctctctccctcaccagAAGATGAATACTAGGTCCTCCTTCTTGCTCTCCTTAGTCTCGTACGTGGCGTCGTACAGGGCGTAGCGGCAGTCATTGGGTGGCAGCATTTTGACGAAGTGCAGATAGGGGTCATCCACTGTGTTGCCCACGTCGCCCAGCAGGATCTCCTTGCCCTCCTCCAGCACGATGTTCTTCATGTCCTGGCTCAGGCAAAACAGCACGGCCTTCTTACGCTTCTTCTTGTCGTCCTCGCACACCTGCGCCTTCCGCACCTTCATCTCGTTGAACACGGTGATGACATTGTCTGCCACGGTCACGCCGGAGGCCTGGGGGACACCAAGAGGAGGGCAGAGGGTTAGAGGGGGGGAgtatgagagggagagaggtcaGAAGGGCTTCAATGCAGCgaggggggtgggtggggtggaTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121287 lncRNA upstream 17518 8147404 ~ 8148059 (+) False AMCG00015335
TU121301 lncRNA upstream 36688 8126775 ~ 8128889 (+) True G97293
TU121289 lncRNA upstream 49025 8114916 ~ 8116552 (+) True G97284
TU121272 lncRNA upstream 63812 8091095 ~ 8101765 (+) True G97271
TU121190 lncRNA upstream 110750 8051523 ~ 8054827 (+) True G97206
TU121334 lncRNA downstream 29485 8197072 ~ 8198473 (+) False AMCG00015345
TU121336 lncRNA downstream 33394 8200981 ~ 8201857 (+) False AMCG00015345
TU121356 lncRNA downstream 75190 8242777 ~ 8244987 (+) True G97347
TU121359 lncRNA downstream 80524 8248111 ~ 8250285 (+) True G97350
TU121379 lncRNA downstream 135798 8303385 ~ 8305677 (+) True AMCG00015362
AMCG00015335 mRNA upstream 16418 8147345 ~ 8149159 (+) True AMCG00015335
AMCG00015343 mRNA upstream 40693 8124306 ~ 8124884 (+) False AMCG00015343
AMCG00015334 mRNA upstream 86745 8074308 ~ 8078832 (+) False AMCG00015334
AMCG00015325 mRNA upstream 194894 7964647 ~ 7970683 (+) True AMCG00015325
AMCG00015324 mRNA upstream 209463 7950563 ~ 7956114 (+) True AMCG00015324
AMCG00015345 mRNA downstream 30734 8198321 ~ 8201394 (+) True AMCG00015345
AMCG00015344 mRNA downstream 47428 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015346 mRNA downstream 91586 8259173 ~ 8264168 (+) True AMCG00015346
AMCG00015356 mRNA downstream 121428 8289015 ~ 8293681 (+) True AMCG00015356
AMCG00015358 mRNA downstream 128237 8295824 ~ 8303048 (+) False AMCG00015358
TU121298 other upstream 39120 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 86816 8074181 ~ 8078761 (+) True AMCG00015334
TU121162 other upstream 209483 7950810 ~ 7956094 (+) False AMCG00015324
TU120961 other upstream 749815 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 1084789 6997633 ~ 7080788 (+) True AMCG00015293
TU121352 other downstream 65837 8233424 ~ 8294330 (+) True G97343
TU121351 other downstream 121383 8288970 ~ 8293527 (+) False AMCG00015356
TU121378 other downstream 127500 8295087 ~ 8302969 (+) True AMCG00015358
TU121387 other downstream 174906 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other downstream 215110 8382697 ~ 8395409 (+) False AMCG00015363

Expression Profile