RNA id: TU121272



Basic Information


Item Value
RNA id TU121272
length 686
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G97271
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8091095 ~ 8101765 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTTGTACACAGAGCACACCCACACTCACCCCCCTCACATCACCTGGGAAGCGGGGGGCACAGCAGAGAGTGGGTACTCTCAAACAATCTCAATCTCGAGAAGTATTAACGAGCAGTGGGGTCACAGTGTGGAGCATGAAGCTCCCGACACCAGCTCTCCTGCTGCTTCACCACTCCTGCATTCCctcaattctctctctctttctctctctgtgtctctctccccctccctccacgGCGCTCTGACCTGATATAGGACGGCTGGTCTTTGAAGTGGTCGCACAGGGGATTGTGCTCCAGCCACAGCTCCTCCAGCTTGAAGCCCTTCACCTTGTCCAGAGCTCCTCTCTCTGAACCTTGGCAACAACAGACTCTACAAACTGGATGAAGTCTCTGAGCTGGTGAGCAAAGTGCCCAACCTGAAGATCCTCAACCTCTCCAACAACGAGGTGAGAGACGGTTTGTAGAGGTGCTTGAAATCCTTCTAATTGCTTGAATTTTAATGTggtattttcaaggttgtgaaagttcttgaattttgttaatttagctaaatttgctaattattttaatactaaaTCGGTAATATGATTATGTGTAATTAACTTTGGCATATAACCAGTAGTTGGGGAGAGGCAGTTGATTGCTTTACGCCGTGGCCAATTTGACTACGGTTTGATTTGTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121190 lncRNA upstream 36268 8051523 ~ 8054827 (+) True G97206
TU121165 lncRNA upstream 129007 7958655 ~ 7962088 (+) True G97184
TU121164 lncRNA upstream 140421 7946208 ~ 7950674 (+) False AMCG00015324
TU121153 lncRNA upstream 160073 7920405 ~ 7931022 (+) True G97172
TU121137 lncRNA upstream 193718 7896205 ~ 7897377 (+) True G97160
TU121289 lncRNA downstream 13151 8114916 ~ 8116552 (+) True G97284
TU121301 lncRNA downstream 25010 8126775 ~ 8128889 (+) True G97293
TU121287 lncRNA downstream 45639 8147404 ~ 8148059 (+) False AMCG00015335
TU121262 lncRNA downstream 63812 8165577 ~ 8167587 (+) True G97265
TU121266 lncRNA downstream 63812 8165577 ~ 8167771 (+) False G97265
AMCG00015334 mRNA upstream 12263 8074308 ~ 8078832 (+) False AMCG00015334
AMCG00015325 mRNA upstream 120412 7964647 ~ 7970683 (+) True AMCG00015325
AMCG00015324 mRNA upstream 134981 7950563 ~ 7956114 (+) True AMCG00015324
AMCG00015323 mRNA upstream 189375 7901121 ~ 7901720 (+) True AMCG00015323
AMCG00015316 mRNA upstream 242092 7845592 ~ 7849003 (+) True AMCG00015316
AMCG00015343 mRNA downstream 22541 8124306 ~ 8124884 (+) False AMCG00015343
AMCG00015335 mRNA downstream 45580 8147345 ~ 8149159 (+) True AMCG00015335
AMCG00015345 mRNA downstream 96556 8198321 ~ 8201394 (+) True AMCG00015345
AMCG00015344 mRNA downstream 113250 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015346 mRNA downstream 157408 8259173 ~ 8264168 (+) True AMCG00015346
TU121271 other upstream 12334 8074181 ~ 8078761 (+) True AMCG00015334
TU121162 other upstream 135001 7950810 ~ 7956094 (+) False AMCG00015324
TU120961 other upstream 675333 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 1010307 6997633 ~ 7080788 (+) True AMCG00015293
TU120766 other upstream 1091512 6997633 ~ 6999583 (+) False AMCG00015293
TU121298 other downstream 22843 8124608 ~ 8126457 (+) True AMCG00015343
TU121352 other downstream 131659 8233424 ~ 8294330 (+) True G97343
TU121351 other downstream 187205 8288970 ~ 8293527 (+) False AMCG00015356
TU121378 other downstream 193322 8295087 ~ 8302969 (+) True AMCG00015358
TU121387 other downstream 240728 8342493 ~ 8432120 (+) False AMCG00015365

Expression Profile