RNA id: TU121289


Basic Information

Item Value
RNA id TU121289
length 1580
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G97284
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8114916 ~ 8116552 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCCGCTGCGAAACAGTTTATTATATAAGAAAACAACAGTGGTTCAGAAACTACAAACAACGTCATTACATCATTGGAATGTGTCGCCCGACAGGCGGAGTGTGGCATCAGAGTGCACTGTCAGGGATCAATACTGTGCAATGTATCAGTGATCAatactgactgtactgtatcaGTGATCAATAAAGTGCACTGTACTGTTTCAGTGATCAATACGCTGACTCCACTGCACTGTCAGACTGGAGCTGGAATAGGTTTCACAAATTCTGCAGAATAATAACCTTATTAATACTCATATTAATTACGATATTACTACTGATAGTAAGAACCTCTCTTCAGTGCACATCAAGGGTTAATAAGTTAGAATGGAATAAATACAGGTATCAAGCtatgatccccccccccccccccccccccccccccccccccaacccccaccatATTAATTGTGACTGTAGGCTACTGTGCTGAAACTACTGCCCCCACTCACTGCAGTGGCAGGGCTGTGCTGTGGTAACTGTAAGTGCACTGTGCTACTACACAGATACTACAgcacagccccctattgtaacagaaCTGTGCTACTATACTGCTACTACAGCACAACCtcctactgtaacagcactgtGCTACTACACTGCTACTACAGCACAGCctcctattgtaacagcactgctctactacacactgtgtatatattatatatttaaatgtatatgcaaaATCATGAACAGAGAACACTGAAGACATAAGAAGGTAGCCATGGAAACTACAGTCTGAGACCCAGCTGACCCCTccaccctgtgtgtgtgagagagggcgTAAAAGGCACAGAGTTTAATGCTGAAATTCACAATAATGTCCCAGcactagtgtgtgtgtctctctgtgagtgtctgtgtgtgtgtgtgtgtgagtgtgtgtgttggcatgTGTCCATGTGTTCAAGAGCTCTGGCAGGGGCCAGTCCGCTGGCAGGGGCCGGTCCGCTGGCGGAGAGCGGTGTCGGGCAGGGGGGGCTCCACGGgctgcagctccagctcctccgAGACACTGGCCTCCACAAAGTCTGGAGCCTCCAGAAGCTCAGGGGGATCCTCTGAGGAAGACTccgacactgagagagagggggagggggagaaagagagagagagacagagagagggtgagggatgcacacagacacactgatgtCACAAGCTCTTTATTCATCTCTGTCCTGTACAAGAGCTGGCACAGAGAtcctgtctatctgtctgtctgtttctctctctcactcttactCTGTCTCCCCtgtagaaaacacacacatatggttgtgtgtagttgtgtagcACCTGAGGAGTTGTGGTGTAGTCATGCAGCACTGAAGAGGATGTGTAGAGTATGTTTGTGTAGCTGTGCATGAGCAGAGTGGTGGTGTAGCAGAGTAGGAATGTAGTTGTGTAGTACCAGAGTAGTTGTAGAgttgagagtgtgtgtagttgtgtagttGAGTGAGCAGTAGCTGTGTAATGGTGTAGTTAGGCGAGATGTGGCTTTGCAGTCATTGATGCAACATTGTATCAGTTTGTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121272 lncRNA upstream 13151 8091095 ~ 8101765 (+) True G97271
TU121190 lncRNA upstream 60089 8051523 ~ 8054827 (+) True G97206
TU121165 lncRNA upstream 152828 7958655 ~ 7962088 (+) True G97184
TU121164 lncRNA upstream 164242 7946208 ~ 7950674 (+) False AMCG00015324
TU121153 lncRNA upstream 183894 7920405 ~ 7931022 (+) True G97172
TU121301 lncRNA downstream 10223 8126775 ~ 8128889 (+) True G97293
TU121287 lncRNA downstream 30852 8147404 ~ 8148059 (+) False AMCG00015335
TU121262 lncRNA downstream 49025 8165577 ~ 8167587 (+) True G97265
TU121266 lncRNA downstream 49025 8165577 ~ 8167771 (+) False G97265
TU121334 lncRNA downstream 80520 8197072 ~ 8198473 (+) False AMCG00015345
AMCG00015334 mRNA upstream 36084 8074308 ~ 8078832 (+) False AMCG00015334
AMCG00015325 mRNA upstream 144233 7964647 ~ 7970683 (+) True AMCG00015325
AMCG00015324 mRNA upstream 158802 7950563 ~ 7956114 (+) True AMCG00015324
AMCG00015323 mRNA upstream 213196 7901121 ~ 7901720 (+) True AMCG00015323
AMCG00015316 mRNA upstream 265913 7845592 ~ 7849003 (+) True AMCG00015316
AMCG00015343 mRNA downstream 7754 8124306 ~ 8124884 (+) False AMCG00015343
AMCG00015335 mRNA downstream 30793 8147345 ~ 8149159 (+) True AMCG00015335
AMCG00015345 mRNA downstream 81769 8198321 ~ 8201394 (+) True AMCG00015345
AMCG00015344 mRNA downstream 98463 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015346 mRNA downstream 142621 8259173 ~ 8264168 (+) True AMCG00015346
TU121271 other upstream 36155 8074181 ~ 8078761 (+) True AMCG00015334
TU121162 other upstream 158822 7950810 ~ 7956094 (+) False AMCG00015324
TU120961 other upstream 699154 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 1034128 6997633 ~ 7080788 (+) True AMCG00015293
TU120766 other upstream 1115333 6997633 ~ 6999583 (+) False AMCG00015293
TU121298 other downstream 8056 8124608 ~ 8126457 (+) True AMCG00015343
TU121352 other downstream 116872 8233424 ~ 8294330 (+) True G97343
TU121351 other downstream 172418 8288970 ~ 8293527 (+) False AMCG00015356
TU121378 other downstream 178535 8295087 ~ 8302969 (+) True AMCG00015358
TU121387 other downstream 225941 8342493 ~ 8432120 (+) False AMCG00015365

Expression Profile