RNA id: TU121356


Basic Information

Item Value
RNA id TU121356
length 2063
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G97347
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8242777 ~ 8244987 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCTTGGACTGGAAAGcttcaaacacaaaaatgaaccCCGATCTGAGCCCAgtgagtaataaaataaaaacattcacagCTTGGATACATTGCATAACTCCCCCACTCCCCCTCCCCAGACTGGAGCACAAACAACATCATGTACCAACAGAACAGGATGAACAGGACGGACTGAAACGCAGGGctgtggagagaaaaaacaaccagAAAACGAAACCAATAAGCTAAACAGAAGCACGGTTTGGGAACAGGCCTACGTGTGTTCAGAGTGTGGAGAGCCGGGAACGTATACAGATTTTGGCAATTCATTACACTGACTTTTACCGACATTGCCGGCCCCAGGGTGGGGGGTTTCTGGTCTCCAGTGCTGGGGGGTGCCTGTTTATTCCAGGTGTGAATCAGTGACTGAATGGAAACCTGTAACCCTGGTATAACCCTACACAGACAtactaccacacacacacatacataaatactcatGCTCTCAGCACAATTAACAGAGATTGGGGAGTTCCTGACTGGACtaagactggactggactgctgtagagtcactgactggactggatgACTCAGAGTGTATCCATGCCTGGCTCAGTCCGTGTGTAACAGCATAGCAGTAGTCCAGACCATAATAGGTGTGGAAAACAAAGGAGAATGGatagaaaggagagagagagagcacacagcCTACATAAACAGCATTGCAGTCTGAGTACAAGGTGCTGCCTGCGGCCCTAGACACAGCTCCTGGCTTCCTGGGACCAGGGAGTTTGAGAAATGAACGATTGTCCATTTTCAGGTTTTCCAAATCTTCCTGATCAGATTGACAGAAAGACACTGCCACACACTCACtcgcagagaggagagagagagacacacagacacagacagacagaaagagactgAAAGCAGAGGCTGAGGGGGGGCTGGGTGCTGGAGAGAAGCCTGTTTCCAGCAGCAGTCAGAGCCCAGCCCTGGCAGGGCAGTAAATTACAGCTGGACAGCTGGTTACACACAGACGACAAGCCCAGAGGCaacgcgcacacacactcacatacacaggcacacactctgtgtatatattcacacacacacagcccattTCCTTATATagctgacacacacagtaaacatatatatatacactctttCTAAATGTCTAAACACTGGaccacacgcacacgcacacgcacacaggctGTGGGAATGAGAGCGTCATATGGCCGTGTGCCCATGTCCTGATGTGTGGTCACAGATACTAATGAGAGTGCAAATGGTAGCGGCCAAGGATCCTTCAAAacctttctctccttctccctttttCAGACTGTCAGTGAGATGAACGGCTTCATACAGAGAATTAAGCTGagtgactttttatttttattctcaaggctgtaaacacacacacagtcatctctcatacacacatacCCCCTACACTCGGCACactaatagtagtagtagtagtagcagtagcagtagtattagTAGATGTTAGTAGTAGTAACATTGCACAGTGTATTCACATTAGACCCACATGTTGTGGCTCAGGTCGGAGTGGAGCTGGAGCAGCCGGTGTGAACAGGGCCCTGTCCCTCCTACTGGAGTCGTACAGTGTGGAGATTGATAAGAAAcctCCTTCTTCGGCAGTATTGGTATGTAGAGTGATCCCGCTCCCcgcatctccctctctctgcctccctctcctcttctccctcaATACCTGTTCAATCAGTGGGTGGGGGCTCCCTGTCCTTGGCCGGGGCAGAGGGGGGCTGGAGGGAGGGCAGCGTGGCCGTCCCCAACAGCCCCCTCCTCAGGACATAGGGGCAGGCAGGGCCGCTGGGGATGTCTGCGAAACCTGGAGGGGGAGGCGACACAGAGAGGGGGCGGTTAATGTTGCAGTTCATTGTAATCGGTCTGGCATGGCTGAGCTTGTTACAGTTATTGTCCCTGCGAGGGAGAGGAAGGTTTAGGATGAATGGAGATGAGTGATGGGAGAGTTTCTCATTGTTTTTCCTTCCAGCTGCAACCTGATGAGGCAAACATGCTGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121336 lncRNA upstream 40920 8200981 ~ 8201857 (+) False AMCG00015345
TU121334 lncRNA upstream 44304 8197072 ~ 8198473 (+) False AMCG00015345
TU121266 lncRNA upstream 75006 8165577 ~ 8167771 (+) False G97265
TU121262 lncRNA upstream 75190 8165577 ~ 8167587 (+) True G97265
TU121287 lncRNA upstream 94718 8147404 ~ 8148059 (+) False AMCG00015335
TU121359 lncRNA downstream 3124 8248111 ~ 8250285 (+) True G97350
TU121379 lncRNA downstream 58398 8303385 ~ 8305677 (+) True AMCG00015362
TU121380 lncRNA downstream 62593 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA downstream 62593 8307580 ~ 8312199 (+) True AMCG00015359
TU121401 lncRNA downstream 159165 8404152 ~ 8411881 (+) False AMCG00015363
AMCG00015344 mRNA upstream 18004 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015345 mRNA upstream 41383 8198321 ~ 8201394 (+) True AMCG00015345
AMCG00015335 mRNA upstream 93618 8147345 ~ 8149159 (+) True AMCG00015335
AMCG00015343 mRNA upstream 117893 8124306 ~ 8124884 (+) False AMCG00015343
AMCG00015334 mRNA upstream 163945 8074308 ~ 8078832 (+) False AMCG00015334
AMCG00015346 mRNA downstream 14186 8259173 ~ 8264168 (+) True AMCG00015346
AMCG00015356 mRNA downstream 44028 8289015 ~ 8293681 (+) True AMCG00015356
AMCG00015358 mRNA downstream 50837 8295824 ~ 8303048 (+) False AMCG00015358
AMCG00015362 mRNA downstream 58582 8303569 ~ 8304117 (+) False AMCG00015362
AMCG00015359 mRNA downstream 63031 8308018 ~ 8312177 (+) False AMCG00015359
TU121298 other upstream 116320 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 164016 8074181 ~ 8078761 (+) True AMCG00015334
TU121162 other upstream 286683 7950810 ~ 7956094 (+) False AMCG00015324
TU120961 other upstream 827015 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 1161989 6997633 ~ 7080788 (+) True AMCG00015293
TU121351 other downstream 43983 8288970 ~ 8293527 (+) False AMCG00015356
TU121378 other downstream 50100 8295087 ~ 8302969 (+) True AMCG00015358
TU121387 other downstream 97506 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other downstream 137710 8382697 ~ 8395409 (+) False AMCG00015363
TU121569 other downstream 284031 8529018 ~ 8533404 (+) True AMCG00015368

Expression Profile