RNA id: TU121359


Basic Information

Item Value
RNA id TU121359
length 2015
lncRNA type inter_gene
GC content 0.64
exon number 2
gene id G97350
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8248111 ~ 8250285 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTGCTGCAGTGCTTTGATGTGGGGCTGTAAGAATCCACTGCTGTTTTCTCCCCCTTCCTGCCCCAGCATTGTCCTCAACTTTTGCTTCTCAGTCTTCATCAAGGACAGCTCCCTCTGCAGCTCCTCCACTAGCCTCTGGATGGTGCCATCCTGCTCTCCCTCTGGGCGGACTAGACTGGCTTCCCTGACTGGCTTCCCCGTGGGGCTGGGAGGTGGAACTGCAGCCTGATGGGATTCCAGCAGTTCGATTACCCTAGAGCTCTCTGGAGCAACAGTCTGACTCTCAGCTGAGCTGTGGGGGCCACCATGGATCCCTGTGAGCTGTTCTGCTTCCTTCTCTGGAAGAGGGGGCTCCCCCTGGCTGCTAGGAGGTAGAACTGCAGCCAGCGTTTTCCTCAGCTCTTCATCCCTGACTActgccctccctccctgcccacCAGCTCCCTTTTCCCCAGCTCCTAGCTGTgcccactctctctctgacccCGCCCCTGGCCCTGCAAACCTCCTGAGCTGCTCGTTCTCTGCCACCAGCCGACTCAGTTCTGCCCTGCAGCCCTGCAGCTCCTCGCCCAGCCTGTGGAGCGCACTGTCCCGGGTCTGCAGGTCCTCCAGCAATGCCTCTATATTGAGGGCCTGGCTGTCGAAGGCCAGAGTGAGCTGTTGGGTCTGGGCGCTCAGGAGGCTCTGCAGGGACTGCAGCCGCTCCTCCGCCTCCCTGGCCCGGCCCTCCTGCACCCGCCTCTCAGAGTCCAGGGAGTCGCAGCGCCGCCGCAGCTGCTCCAGTTCCGGTTCGAGCAGGGAGCCCCCGTCTTCCTCGCCGCGCCCATCACTGAGCTTAGTGTCCTCGTCTCTGTCCAACCCCTCTCTGTCCATGTCTTTATCCTTATCTGCAGGGCAGTGTGTGACCTGATCCTGCAGAGTCTCAGGCTCACTTGCAGTCGTGGGCGAGATGCTCTCCtcagactgggagagagagggctggGGCTGGGGTTGGGGCTGAGGCTGGGACAAGTCCGGCTCCTCCCTGCTCTCCTCCagctcactccctctctcctccagctccaCCCCACTCTCGCAGTGGCTGTCACTCCTGTCTTTCTTCTCAtcattagtattgttgttgttgttggtgttggtggtgCCATGACAGCCGCCCTCTCTGCGGTTGTGGGGGTCCAGGCGGTCAGCGTTGCAGCCGCCACTAGGGGGGTCACTGTGGGAAGCCGAGGTCACCACCCCGCCCCTGTCTGCCTTGCCCCTCGCATCCAAGTCTGCCTTCGTGACCACGGCCTCCCTCCCCTGCCCTGACTCCAGCTCCCTGACACTCTGCATCCTCGACTCTTTGCCtgcctccgcctcctcctcctcctccctttgccGCAGCTGTTTCAACTGGGCGGCCTCAGTCTCCAGGGAGGCAAGGGCCTGCGTGAGCCGGGCTGCCTCACCCCGCTCTGCCTCAAGTGCTGCCTCCAGCCTAGCCTCCTTCTCCTGTAGCTCCTGGGCCCTCTGTCTCAGGATCTCAGCCTGCACGCCGTGCCTCTTGCCGGCCTGCTTCAGCCTGCTTCTGGCTTCGGCCTCCGCTCGGCGCTGGGCCTCCAGGTCCTCCAGCCTCAGCTCCAGCTCCCGCCTTGCCTCCCGCAGCTCACCGCGCAGCCACTCGTTCTCCCTCTGCAGCTGCCCGGCCtgatcctcctcctccctgtctccctctccttgCAAAGAGCTGCCTCCGTCTCTACTCTCCCTTCCTGGgatctctctccttcctcttcctccgtctcctcctcctgtGTAACAGTTCCCCCCCACTCAGGTTCCTGCGTCTCTGAAGCATCTCTGCCTTCTGCCGGCTCCCTGCCCTGCGTGGGCGTCTCCCTCTGACCCGCCCCTCCACTCCTCTGGGACCGGGGACGGCGCTTGACCAACTTGGGGCTGAGACTGCAGCCCCCTCCTCCTGCCTGCGAGATCCTGACGGGGGCCTCGGGGACATGGGGGGGAGAAGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121356 lncRNA upstream 3124 8242777 ~ 8244987 (+) True G97347
TU121336 lncRNA upstream 46254 8200981 ~ 8201857 (+) False AMCG00015345
TU121334 lncRNA upstream 49638 8197072 ~ 8198473 (+) False AMCG00015345
TU121266 lncRNA upstream 80340 8165577 ~ 8167771 (+) False G97265
TU121262 lncRNA upstream 80524 8165577 ~ 8167587 (+) True G97265
TU121379 lncRNA downstream 53100 8303385 ~ 8305677 (+) True AMCG00015362
TU121380 lncRNA downstream 57295 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA downstream 57295 8307580 ~ 8312199 (+) True AMCG00015359
TU121401 lncRNA downstream 153867 8404152 ~ 8411881 (+) False AMCG00015363
TU121407 lncRNA downstream 226937 8477222 ~ 8480537 (+) True G97383
AMCG00015344 mRNA upstream 23338 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015345 mRNA upstream 46717 8198321 ~ 8201394 (+) True AMCG00015345
AMCG00015335 mRNA upstream 98952 8147345 ~ 8149159 (+) True AMCG00015335
AMCG00015343 mRNA upstream 123227 8124306 ~ 8124884 (+) False AMCG00015343
AMCG00015334 mRNA upstream 169279 8074308 ~ 8078832 (+) False AMCG00015334
AMCG00015346 mRNA downstream 8888 8259173 ~ 8264168 (+) True AMCG00015346
AMCG00015356 mRNA downstream 38730 8289015 ~ 8293681 (+) True AMCG00015356
AMCG00015358 mRNA downstream 45539 8295824 ~ 8303048 (+) False AMCG00015358
AMCG00015362 mRNA downstream 53284 8303569 ~ 8304117 (+) False AMCG00015362
AMCG00015359 mRNA downstream 57733 8308018 ~ 8312177 (+) False AMCG00015359
TU121298 other upstream 121654 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 169350 8074181 ~ 8078761 (+) True AMCG00015334
TU121162 other upstream 292017 7950810 ~ 7956094 (+) False AMCG00015324
TU120961 other upstream 832349 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 1167323 6997633 ~ 7080788 (+) True AMCG00015293
TU121351 other downstream 38685 8288970 ~ 8293527 (+) False AMCG00015356
TU121378 other downstream 44802 8295087 ~ 8302969 (+) True AMCG00015358
TU121387 other downstream 92208 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other downstream 132412 8382697 ~ 8395409 (+) False AMCG00015363
TU121569 other downstream 278733 8529018 ~ 8533404 (+) True AMCG00015368

Expression Profile