RNA id: TU121407


Basic Information

Item Value
RNA id TU121407
length 2709
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G97383
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8477222 ~ 8480537 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGCAGGAAGAAGAGAAACCAAACAGAATAATGTTCACAATATCAAAAGGAAAGAGAAGCCATGTAAATGACAGCACGACCGCCTGGCCACCATCCCCAAGTCTTTCACTGCAACTGGCTCTCCTCACAACTGCAGTGTGccattaaacattacattgtgCAGGATTGGCAAGTCAGATCCTCCACTTCCTTGCGGTTtttgaacagttttattttttgcaggtAGGAGGCGCATACGGACAGTGCGGGAGTGGACATCTTGTCAGGCCTGGGGAAAACAGGTCACGGGTGTCACCCCTTATTCCTACGATGGAAGCACACTATGGAAGCACCCACACAGCCGGCCGCCCACCCGCGCCTGTCCTCTCGAGGTGTGCTGGTGCCCTGGCCACAGCCTGACGCTGCCTTACCCGCTGGCTGCAGTGTGGCAGCCTGTCCCCCTGGACAGCGCACCTCCTGGGCAGTAGCGAGCAGGACTGCATGGTGCCACTCCCCAGCCGGGCGCAGCTCTGGGGGGCTGAGGGTATCAGCCTAAGGCACAGCATAGGACTCTTTTGGGCTACAGATGCAGAAGCAACGACCACTTCCCCATcgtaattttgtcatttttatttatgaattaatctGCAACTCAGAgtggtgttggtgtgtgtgtatgctgggggaggaggaaggagggaggcTAGAGGCAGAGTGCTGAGGCAATGGCAAGTTCTCaaacttccccccccccccccccccatttcttggttttcactttttcttaaaaaattaaataaaaactaaacatgttAAACAAACTGGAGTGTCCAGCCCTAGTACTAAACTCCCGTGGCGCTGGCTGGTGCAAGCTTTGGTCCTTGACCTGATTAACAATACTATCTCTAATGATTataacaaacagcagcagctctgcGTTTAAAAAAAAGCCTGGTTATTTGTAGTTCTACTACCAATACTTCATTTAAATCATCAGCCAGGACTGTAACTAACTGGGCTGTTTCCATTTAGGAAAAATCAATTCAGCCGATCTGCAGACGCGCAGCACTCTCACCGGGGCAGACGGGCCTCCTGGCATAGGGCGGAGCTGGCCTTCCTTCTACCAACCTCCCCCCTGAAGGCCAGCCAACCTCCCACTCAATACCACCCCCTGCAGTGTCCGACTGcagtcacccccccccccacgacGCCACCCAAGCGCCCCTGCATCGCCACCTCCGCTGAACACTGGCGCGAAACACTATGGTGCGCAGGgcggaaaaaaaataataataatNNNNNNNNTGACTGGTCGCTGGTTTGGGTTTTTTAAGCTCGATCTAGTTTTTCAGCCCACTGACTCCAGTTTGGACACCTTTCTCCCCCAGTGAGGGACATGAAACAAAACCAGAGTCAGACTGGGACAGGAAGTCAGCTTTGGGAAGCAGTGTATGCCGGGAGCAGCCGTGTCTGACACATACCAGGAAACGGGAAGTGTACGTTTCAGAACAGGGGAGGGAGAACAGAAaccaaaactaacaaaaacaaattaacatgcaTCTCTCTTGccttaaactttaaaaaatatttagttatggtttgtttttgtacatataGTGATCTTTAAATCTCACAGTCAAGCACTGGTGACAATGGCATGCTTATAGAGACCAAACTAAACTGGAGGGAAAGAAAagttcaaaatcataaaaaaacaaaagcatgtgtGTTGGGGGCAGGGGGGCCTGAATCAAAGCTGGGTCCATACAGGCCAGGGTGCAGGGGTCGGGGTTACAgaacagaatggaaaaaaaaaaaaaaaaaaagtaaagaaaaaggaagctgactggagaggggggggggggggggggggggtagaaaaaaatagaaggggagaaaggaaggaaggggTTGGAAAAAGAAAGTCCATACACTTCTTCACACATGACAATGCCAGGGTCCGTTCGGAGCTGGACATCACTTTGCGGTCATCATCTGTACAAACTCTgcacacagagagggggagggaagagttAATTATGCACCCGATTATTTTCTTGGATGCAAAATCAGTTTGTATCGGTCAGTCAGtttgcagtgtagtacagtgtggATAGTGCAGTGCATCAATGTAGTCTAGTGTGTGTATAGTGCATCAATCTGTACAGTATAGGGTCACTAAAGCGCCAGAGCACTAGTCTTAGTACAGTATAGTGGGTCGATCAGTCCAAGGTGCCCCTCAACACACTGACCTTCGTAGTTGACCTGTCCGTCGCCATCGATGTCGGCTTCTCTGATCATCTCATCCACCTCCTCGTCGGTCAGCTTCTCGCCCAGGTTGGTCATGACGTGGCGCAGCTCAGCTGCACTGATGTAGCCGTTACCGTCCTGAGGACACAGCGCGCGGCAACATCACCACACAGCAAAACTACCGTCACATCCCGATACTAACCTCAACACTACATTCACACATTCCTCAACCCCAAACACTCAACACTACAGCATTAGTTACATCTCCCCCCACACCTTGTCGAAGACTCTGAAGGCCTCTCTGATCTCCTCCTCACTGTCGGTGTCCTTCATCTTCCGCGCCATCATGGTTAGGAACTCAGGGAAGTCAATGGTGCCGTTTCCTGAgaagggtcaaaggtcaagagCTAGTGGGCAAGGGTTAGGAACCAAGCTTCCCAGCATCATACTCTCTCCCTGTGTGCATCTCCTCTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121401 lncRNA upstream 65341 8404152 ~ 8411881 (+) False AMCG00015363
TU121380 lncRNA upstream 165023 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA upstream 165023 8307580 ~ 8312199 (+) True AMCG00015359
TU121379 lncRNA upstream 171545 8303385 ~ 8305677 (+) True AMCG00015362
TU121359 lncRNA upstream 226937 8248111 ~ 8250285 (+) True G97350
TU121616 lncRNA downstream 132718 8613255 ~ 8616320 (+) True G97543
TU121620 lncRNA downstream 143552 8624089 ~ 8624476 (+) True G97547
TU121621 lncRNA downstream 143552 8624089 ~ 8624687 (+) False G97547
TU121635 lncRNA downstream 211891 8692428 ~ 8692642 (+) True G97560
TU121670 lncRNA downstream 238704 8719241 ~ 8719562 (+) True G97588
AMCG00015364 mRNA upstream 33328 8433483 ~ 8443894 (+) True AMCG00015364
AMCG00015365 mRNA upstream 44130 8427695 ~ 8433092 (+) True AMCG00015365
AMCG00015363 mRNA upstream 66178 8382669 ~ 8411044 (+) True AMCG00015363
AMCG00015357 mRNA upstream 96045 8372466 ~ 8381177 (+) True AMCG00015357
AMCG00015359 mRNA upstream 165045 8308018 ~ 8312177 (+) False AMCG00015359
AMCG00015369 mRNA downstream 34176 8514713 ~ 8524559 (+) True AMCG00015369
AMCG00015368 mRNA downstream 49606 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015370 mRNA downstream 72261 8552798 ~ 8572065 (+) True AMCG00015370
AMCG00015378 mRNA downstream 111379 8591916 ~ 8596613 (+) True AMCG00015378
AMCG00015377 mRNA downstream 128313 8608850 ~ 8612864 (+) True AMCG00015377
TU121387 other upstream 45102 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other upstream 81813 8382697 ~ 8395409 (+) False AMCG00015363
TU121378 other upstream 174253 8295087 ~ 8302969 (+) True AMCG00015358
TU121352 other upstream 182892 8233424 ~ 8294330 (+) True G97343
TU121351 other upstream 183695 8288970 ~ 8293527 (+) False AMCG00015356
TU121569 other downstream 48481 8529018 ~ 8533404 (+) True AMCG00015368
TU121580 other downstream 62787 8543324 ~ 8544782 (+) True G97513
TU121633 other downstream 206231 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 348199 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 396755 8877292 ~ 8883953 (+) False AMCG00015390

Expression Profile