RNA id: TU121580


Basic Information

Item Value
RNA id TU121580
length 1436
RNA type TUCP
GC content 0.44
exon number 2
gene id G97513
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8543324 ~ 8544782 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCGGATTATCAATCACTTATCTGAGATACACTGGaatgtgcgagtgtgtgtgttctttgtTTTCCATGGATATATTTAGACTCTGGGTCCAAAGTCCACTGCTCAGTTCTGTTTGCTGTGGACTGATTGGAAATGagtgttcttgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagctgaccAGAGCAAGGTCATCAAGATCtgataaatattcaaatgtacagttttcaagtgttgatttattacatttatttacacaatagttgatttatttacttatttttacagtatttttacaaGTTTTAGCACAAAACAGTTGAAATGGCACAAAGGATGCAGGTGATTGACAGCTGGACGGGGAGGGCAGGACAATGGCTTCCTGTAGCTCAGCCCCTGTATTCAATCACACCGGTAGGGCGTCAAAGCTAGGAGGCATAAGCGATTGGGTGGACAGGATTATCAAAGAGGCTATAAACAAGTGCCTCTCCattcccctctcctctctcccgctctccctTTCCTCTCTTAGTCAGTTTATCAGTCAGTCATTTCTcgctctctgtgtctctattttgctccctctttccttttctctctctctctccttctccctcccctttTCTCTTCCGGTCTCCATTCCCTTTCTCTGCCCCTTTGTTCTCTCCCCATCTTCCTTCTATCCTTCTCCCCATCAATCTCTCTCTTGTCTCTCCCCATCAATCCAGTTTTGTCCAGTCCCAGTGTAGATCAGTCCAGTCtgttacaatacagtgcagtgtagtataatTCAATACTGTAGAAGGCATTGCAATGCAGTATAGTCCAGTACAACACAGTGCAGCATAGTGTactacaatacagtgcagttaagTATACTACAGAgcactacagtacaatacagtctagcacagtgcagtatagtacagttaaattagggttacagagcaatataataaattaaagtcaCTTTAGAAGAACAGTATAGCTGTATAGTTCCGGGCAGagcactacagtacagtgcaatacagtacagtgcagtaaggtgtagtatagtatagtccACCAGTGCAacatagtacagtgcagtataacaGTGTAATACACTGCAGTATAACAGTGTAATACACTACAGTATAACAGTGTAATAGAGTACACTACATTATAACAATGTAATACCGTCCAATATTACAGTGTACTACAGTCCAGTGCAGTTCAGTCAGGTCAGGTGCGTGTCAGGGTGCTGTGATGACAGGGACTCTATTTGTAGTATCCCAGATTGGAAGAATGCTTCAAAAAGGAGGATTTttgaggagaggaggaggagggggaggaggagggggaggaagagacGGGGGCGAGGGTGATGGTGTGCAGGTTGGTTATGAAGGCCTCCCAGCCTCGGCGAAATGCCCTGTCGaaggc

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121407 lncRNA upstream 62787 8477222 ~ 8480537 (+) True G97383
TU121401 lncRNA upstream 131443 8404152 ~ 8411881 (+) False AMCG00015363
TU121380 lncRNA upstream 231125 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA upstream 231125 8307580 ~ 8312199 (+) True AMCG00015359
TU121379 lncRNA upstream 237647 8303385 ~ 8305677 (+) True AMCG00015362
TU121616 lncRNA downstream 68473 8613255 ~ 8616320 (+) True G97543
TU121620 lncRNA downstream 79307 8624089 ~ 8624476 (+) True G97547
TU121621 lncRNA downstream 79307 8624089 ~ 8624687 (+) False G97547
TU121635 lncRNA downstream 147646 8692428 ~ 8692642 (+) True G97560
TU121670 lncRNA downstream 174459 8719241 ~ 8719562 (+) True G97588
AMCG00015368 mRNA upstream 10183 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015369 mRNA upstream 18765 8514713 ~ 8524559 (+) True AMCG00015369
AMCG00015364 mRNA upstream 99430 8433483 ~ 8443894 (+) True AMCG00015364
AMCG00015365 mRNA upstream 110232 8427695 ~ 8433092 (+) True AMCG00015365
AMCG00015363 mRNA upstream 132280 8382669 ~ 8411044 (+) True AMCG00015363
AMCG00015370 mRNA downstream 8016 8552798 ~ 8572065 (+) True AMCG00015370
AMCG00015378 mRNA downstream 47134 8591916 ~ 8596613 (+) True AMCG00015378
AMCG00015377 mRNA downstream 64068 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015376 mRNA downstream 82989 8627771 ~ 8655109 (+) True AMCG00015376
AMCG00015381 mRNA downstream 185192 8729974 ~ 8731761 (+) True AMCG00015381
TU121569 other upstream 9920 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 111204 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other upstream 147915 8382697 ~ 8395409 (+) False AMCG00015363
TU121378 other upstream 240355 8295087 ~ 8302969 (+) True AMCG00015358
TU121352 other upstream 248994 8233424 ~ 8294330 (+) True G97343
TU121633 other downstream 141986 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 283954 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 332510 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 407011 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 407011 8951793 ~ 8953675 (+) False AMCG00015396

Expression Profile