RNA id: TU121616


Basic Information

Item Value
RNA id TU121616
length 1271
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G97543
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8613255 ~ 8616320 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAAGTTCAGCTGCTTTATTAAACATTGTATCATAAAAGTGTAACAAACAGGGGGAAAAGTATTGCTAAGTATACCtggttctttattttattttttatgaccCAGTGTCCTGCAAAATTTGGCATTAAGAGAAgaggagggatggggggggttACAGTTCCTATGGCAATCAgacccctctctccccatctccttCCCTCCCCCAACTCTCCCCTCCTCTTGCCAAAAAGTGTCAGTCTCCATCCAGCAGTGTTGACACTGGGTAGACCGCCATCACTTGCCAGATACTGTccgtcaatgtttttttttttttgttttgttttttttttagtgattTTTCTAAGCTCTGCTTGGAAAGAGGCAGAGGAACAGTCTGCCGTATAGTGTCTCTCTTTAGATCTCGTCGCATTCCCGAAAAAATCCCAAATCCGtgacaaataaaaaagctgcaattccaaaaaaaacaaaatacattaaaaccacCTGTAAcatttaccattattattattccacgCATGTTCTAACTGTTCTGTTTAACCAGCCCCCAAAAAGGCAAAAATACCTGAAgcagaacaatacaaaacatgtcTAATGTATTTTCCTTGGCTCTTACTAGATGGTTTCCTGAAGCCATGACCGTAATCACATTGTTTCAGATGAAGGCTGAGAATAAACTGACTGTTTTCATGCACTGTAGATGTTCTACTGTTAACTTAGTAGATCAATCacatataacaataaaaatccTAGAAAACAGACCTGGAAGAACATCACAACCCACACCCCTCCCAGACTTGCACTGTCACAcagatctgtgtgtttgtgtgtacaggGTGTAATTAGCTAAAGGCCTGAGCgctgcccccacccccctgggACTGCAACCTAGGTAGCACCCCCACCAGACAGCGCTGCCTTGGTAGCACCAGCCCCCACCATCCAatggggtttttgttttgttcgtgacagtgttttttattacatCAGCCTTTAGGTTCAGAGCCCCATTGCGGCTTTATAGTTACGCACTTGTGGCTGTCTGTCAGTCGCTccctattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatctctgcaTGTGCACCTTGGTGACCCTGCCCCTGTATACGTCTCCGTCTTTGTCAGTGTGCGCGTGTCTGTATCCCTGCTGTGTGGTGTCCGGGTGGggaggggtcaggggtcacttCTTCTGCGGCGTGCTGAGCTTCTGCATCCCCCGAATCTTGTCCAGCAACTCTGTCACAAAGTC

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0015849 organic acid transport biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:0098656 anion transmembrane transport biological_process
GO:0046942 carboxylic acid transport biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0006839 mitochondrial transport biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0005746 mitochondrial respirasome cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121407 lncRNA upstream 132718 8477222 ~ 8480537 (+) True G97383
TU121401 lncRNA upstream 201374 8404152 ~ 8411881 (+) False AMCG00015363
TU121380 lncRNA upstream 301056 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA upstream 301056 8307580 ~ 8312199 (+) True AMCG00015359
TU121379 lncRNA upstream 307578 8303385 ~ 8305677 (+) True AMCG00015362
TU121620 lncRNA downstream 7769 8624089 ~ 8624476 (+) True G97547
TU121621 lncRNA downstream 7769 8624089 ~ 8624687 (+) False G97547
TU121635 lncRNA downstream 76108 8692428 ~ 8692642 (+) True G97560
TU121670 lncRNA downstream 102921 8719241 ~ 8719562 (+) True G97588
TU121703 lncRNA downstream 160897 8777217 ~ 8779046 (+) True G97612
AMCG00015377 mRNA upstream 391 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015378 mRNA upstream 16642 8591916 ~ 8596613 (+) True AMCG00015378
AMCG00015370 mRNA upstream 41190 8552798 ~ 8572065 (+) True AMCG00015370
AMCG00015368 mRNA upstream 80114 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015369 mRNA upstream 88696 8514713 ~ 8524559 (+) True AMCG00015369
AMCG00015376 mRNA downstream 11451 8627771 ~ 8655109 (+) True AMCG00015376
AMCG00015381 mRNA downstream 113654 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015383 mRNA downstream 119641 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015382 mRNA downstream 132567 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015391 mRNA downstream 181913 8798233 ~ 8800278 (+) True AMCG00015391
TU121580 other upstream 68473 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 79851 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 181135 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other upstream 217846 8382697 ~ 8395409 (+) False AMCG00015363
TU121378 other upstream 310286 8295087 ~ 8302969 (+) True AMCG00015358
TU121633 other downstream 70448 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 212416 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 260972 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 335473 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 335473 8951793 ~ 8953675 (+) False AMCG00015396

Expression Profile