RNA id: TU121620


Basic Information

Item Value
RNA id TU121620
length 365
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G97547
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8624089 ~ 8624687 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagagtcactgactggactggactggactggtgcagagtcactgactggactggactggactggactgctgcagggtcactgactggactggactggactggactggactgctgcagagtcactgactggactggactggactggactgctgcagagtcactgactggactggactggactgctgcagagtcactgactggactggactggactgctgcagggtcactgactggactggtgcagagtcactgactggactggactggactggactggtgcAGAGTCACTaagtggactggactggactgctgcagagtcactgacttgactggactggactggactgctgcagagtcactgactg

Function

GO: NA

KEGG:

id description
ko04072 Phospholipase D signaling pathway
ko05231 Choline metabolism in cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121616 lncRNA upstream 7769 8613255 ~ 8616320 (+) True G97543
TU121407 lncRNA upstream 143552 8477222 ~ 8480537 (+) True G97383
TU121401 lncRNA upstream 212208 8404152 ~ 8411881 (+) False AMCG00015363
TU121380 lncRNA upstream 311890 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA upstream 311890 8307580 ~ 8312199 (+) True AMCG00015359
TU121635 lncRNA downstream 67952 8692428 ~ 8692642 (+) True G97560
TU121670 lncRNA downstream 94765 8719241 ~ 8719562 (+) True G97588
TU121703 lncRNA downstream 152741 8777217 ~ 8779046 (+) True G97612
TU121720 lncRNA downstream 159270 8783746 ~ 8783991 (+) True G97618
TU121721 lncRNA downstream 159736 8784212 ~ 8785276 (+) True G97619
AMCG00015377 mRNA upstream 11225 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015378 mRNA upstream 27476 8591916 ~ 8596613 (+) True AMCG00015378
AMCG00015370 mRNA upstream 52024 8552798 ~ 8572065 (+) True AMCG00015370
AMCG00015368 mRNA upstream 90948 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015369 mRNA upstream 99530 8514713 ~ 8524559 (+) True AMCG00015369
AMCG00015376 mRNA downstream 3295 8627771 ~ 8655109 (+) True AMCG00015376
AMCG00015381 mRNA downstream 105498 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015383 mRNA downstream 111485 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015382 mRNA downstream 124411 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015391 mRNA downstream 173757 8798233 ~ 8800278 (+) True AMCG00015391
TU121580 other upstream 79307 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 90685 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 191969 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other upstream 228680 8382697 ~ 8395409 (+) False AMCG00015363
TU121378 other upstream 321120 8295087 ~ 8302969 (+) True AMCG00015358
TU121633 other downstream 62292 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 204260 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 252816 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 327317 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 327317 8951793 ~ 8953675 (+) False AMCG00015396

Expression Profile