RNA id: TU121633



Basic Information


Item Value
RNA id TU121633
length 913
RNA type TUCP
GC content 0.63
exon number 1
gene id G97558
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8686768 ~ 8687680 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGGCTGGCCGTCCATCTCGATATCCAACTTGGCGAAGGGCCCGTCCCCGCCTTCTGTCTCCACGATGATGCCACGATGCTTGTCCACCCGGTAACGCTTGCGCACGTACTTGTAGAAGAGCAGGCGCCGGTCGGCCACCCAGGCCTGCAGCACGCATagggggaagaagaagaaggtgaGCACCGCCTCCCACACCTCCACCACGCCTGGGGAGGACACGGATAGGATGATGTAGAGCCACACGTAGGCGAAGATGCTCCAGGCGGCTGTGACAAAGAACACACGCAGGTGTTTGATCTTGCGTGTCTCGCCGTCAGGCACCACGTAGACGCAGATGGCGATGATGACGAACATGTTGAAGGCGGCGCTGCCCACGATGGTGGAGGGCCCCAGGTCGCCGGCCTCAAACTGGTGCCCGCACACCTCGATCACAGACAGCAGGATCTCGGGGGCAGAGGAGCCCAGCGCCATGAGGGTGAGGTTGGAGACCGTCTCGTTCCAGATGCGcacggtggtggtggtggtctcGCCATTGGGCTTCTTGACCGTGATCTCCTTCTCCTGCGAGGTGATGACCTCGATGGAGGACATGAACCGGTCAGCGATGATGGACATCCCCAGGAACATGTAGATGAGTGCCACGAAGTACACAATGGCCCGCGCCACCTTGTCCCCTACTGATGGGTCCTGGGGGTTCCACACGGGCAGCACCACCCCGTCCGAGCAGCCCGACGCCGCCCTCGAGCAGTTGCCCCTCCCCCCGCCGACCGGTGCCTGGATCTCGCCGGCGCCGCACACCGGAGTCAGGGCCAGGACCAGCATGGCAGGGGCCAATAGGAGCAGCCGGGGGCAGTGCGTCTTGGAAGAGGGACGTGACATGGTGGCAGCAGGGGGCAGGAGATTAGCTTTtcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121621 lncRNA upstream 62081 8624089 ~ 8624687 (+) False G97547
TU121620 lncRNA upstream 62292 8624089 ~ 8624476 (+) True G97547
TU121616 lncRNA upstream 70448 8613255 ~ 8616320 (+) True G97543
TU121407 lncRNA upstream 206231 8477222 ~ 8480537 (+) True G97383
TU121401 lncRNA upstream 274887 8404152 ~ 8411881 (+) False AMCG00015363
TU121635 lncRNA downstream 4748 8692428 ~ 8692642 (+) True G97560
TU121670 lncRNA downstream 31561 8719241 ~ 8719562 (+) True G97588
TU121703 lncRNA downstream 89537 8777217 ~ 8779046 (+) True G97612
TU121720 lncRNA downstream 96066 8783746 ~ 8783991 (+) True G97618
TU121721 lncRNA downstream 96532 8784212 ~ 8785276 (+) True G97619
AMCG00015376 mRNA upstream 31659 8627771 ~ 8655109 (+) True AMCG00015376
AMCG00015377 mRNA upstream 73904 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015378 mRNA upstream 90155 8591916 ~ 8596613 (+) True AMCG00015378
AMCG00015370 mRNA upstream 114703 8552798 ~ 8572065 (+) True AMCG00015370
AMCG00015368 mRNA upstream 153627 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015381 mRNA downstream 42294 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015383 mRNA downstream 48281 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015382 mRNA downstream 61207 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015391 mRNA downstream 110553 8798233 ~ 8800278 (+) True AMCG00015391
AMCG00015389 mRNA downstream 114747 8802427 ~ 8809201 (+) True AMCG00015389
TU121580 other upstream 141986 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 153364 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 254648 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other upstream 291359 8382697 ~ 8395409 (+) False AMCG00015363
TU121378 other upstream 383799 8295087 ~ 8302969 (+) True AMCG00015358
TU121740 other downstream 141056 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 189612 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 264113 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 264113 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other downstream 264113 8951793 ~ 8953675 (+) False AMCG00015396

Expression Profile